Job Description P03959 Confidence 2.07% Date Thu Jan 5 10:58:06 GMT 2012 Rank 45 Aligned Residues 146 % Identity 15% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	V	F	I	A	G	L	M	I	G	R	T	P	E	Y	L	G	K	K	I	D	V	R	E	M	K	L	T	A	L	A	I	L	V	T	P	T	L	V	L	M	G	A	A	L	A	M	M	T	D	A	G	R	S	A	M	L	N	P	G	P	H	G	F	S	E	V	L	Y	A	V	S	S	A	A	N	N	N
Query Conservation
Alig confidence																	.	.	.	.	.																																																										.	.	.
Template Conservation																	.	.	.	.	.																																																										.	.	.
Template Sequence		Q	M	S	I	F	L	A	R	I	S	R	G	R	T	V	.	.	.	.	.	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	.	.	.
Template Known Secondary structure										T		S	S				.	.	.	.	.																																T	T	S								G	G	G												T	S	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.																																																										.	.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.						.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510			.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		G	S	A	F	A	G	L	S	A	N	S	P	F	W	N	C	L	L	A	F	C	M	F	V	G	R	F	G	V	I	I	P	V	M	A	I	A	G	S	L	V	S	K	.	.	K	S	Q	A	A	S	S	G	T	L	P	T	H	G	P	L	F	V	G	L	L	I	G	T	V	L	L	V	G	A	L	T	F	I	P
Query Conservation																																													.	.
Alig confidence		.	.	.	.	.	.	.	.																																				.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	E	E	P	P	L	L	V	R	I	G	W	S	I	L	V	G	I	I	G	I	V	L	L	A	L	G	G	L	K	P	I	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	S	S	T	T																												T	T	S		S	S	S	S	S		S	S		S	T	T																				S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		546	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	I	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		474	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions