Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	A	I	D	N	Q	I	R	N	I	S	S	S	H	Q	D	K	H	S	D	K	V	N	S	H	Q	H	H	G	K	V	D	K	T	H	R	A	K	I	V	E	F	D	K	L	D	N	D	S	Q	I	D	N	D	F	G	L	H	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?						?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?											?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	Y	F	L	Q	H	G	H	W	K	V	N	D	R	S	H	Q	M	E	K	V	W	F	Y	N	S	E	P	S	I	D	I	Q	E	Y	N	R	F	A	D	N	T	T	D	T	F	I	F	T	I	I	P	D	N	N	H	V	L	K	L
Secondary structure
SS confidence
Disorder											?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	S	P	I	T	V	T	V	E	C	K	G	G	Y	Y	F	I	N	S	S	G	D	K	S	D	I	I	Y	K	V	D	G	L	S	I	I	A	R	N	F	F	T	L	L	S	G	N	F	K	P	D	W	R	W	D	V	S	K	E	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	T	K	E	K	F	D	S	Y	V	K	S	V	F	S	K	I	D	F	Y	K	Q	C	G	V	I	N	P	Q	N	A	N	T	A	Y	F	G	D	T	D	G	R	V	G	A	V	L	Y	A	L	L	V	S	G	H	I	G	I	R	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		K	G	W	S	L	L	C	E	L	L	K	H	E	E	M	A	S	S	A	Y	K	H	K	N	N	K	V	L	Y	D	L	L	N	T	R	D	M	I	L	N	E	L	H	Q	H	V	F	L	K	D	D	A	I	T	P	C	I	F	L	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	H	T	G	D	R	F	S	T	I	F	G	D	K	Y	I	L	T	L	L	N	S	M	R	N	M	E	G	N	K	D	S	R	I	N	K	N	V	V	V	L	A	G	N	H	E	I	N	F	N	G	N	Y	T	A	R	L	A	N	H
Secondary structure
SS confidence
Disorder																										?	?	?	?	?	?	?	?	?	?																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		K	L	S	A	G	D	T	Y	N	L	I	K	T	L	D	V	C	N	Y	D	S	E	R	Q	V	L	T	S	H	H	G	I	I	R	D	E	E	K	K	C	Y	C	L	G	A	L	Q	V	P	F	N	Q	M	K	N	P	T	D	P	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																														?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		E	L	A	N	I	F	N	K	K	H	K	E	H	M	D	D	P	L	F	H	L	I	R	S	N	T	L	K	P	T	P	V	Y	A	N	Y	F	D	N	T	T	D	F	R	P	A	R	E	R	I	F	I	C	G	E	T	L	K	G	E
Secondary structure
SS confidence
Disorder															?	?								?	?	?		?	?	?																												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.
Sequence		D	P	S	K	Y	I	R	Q	K	Y	G	H	H	G	P	G	V	D	H	N	Q	Q	F	D	N	G	I	M	G	L	N	S	L	K	E	A	R	D	K	N	N	K	I	I	Y	S	S	G	L	S	C	F	Q	L	H
Secondary structure
SS confidence
Disorder		?	?										?	?	?	?	?	?	?	?	?	?	?	?	?	?										?	?	?	?	?		?												?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3c5w chain C domain 1 Region: 247 - 347 Aligned: 87 Modelled: 99 Confidence: 73.4% Identity: 21% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: Protein serine/threonine phosphatase Phyre2 PDB 1jk7 chain A Region: 247 - 347 Aligned: 87 Modelled: 101 Confidence: 59.2% Identity: 21% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: Protein serine/threonine phosphatase Phyre2 PDB 2p6b chain A domain 1 Region: 197 - 347 Aligned: 85 Modelled: 96 Confidence: 52.1% Identity: 28% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: Protein serine/threonine phosphatase Phyre2 PDB 2p6b chain C Region: 197 - 347 Aligned: 85 Modelled: 96 Confidence: 51.7% Identity: 28% PDB header:hydrolase/hydrolase regulator Chain: C: PDB Molecule:calmodulin-dependent calcineurin a subunit alpha PDBTitle: crystal structure of human calcineurin in complex with2 pvivit peptide Phyre2 PDB 1aui chain A Region: 210 - 347 Aligned: 72 Modelled: 83 Confidence: 49.5% Identity: 35% PDB header:hydrolase Chain: A: PDB Molecule:serine/threonine phosphatase 2b; PDBTitle: human calcineurin heterodimer Phyre2 PDB 1aui chain A Region: 210 - 347 Aligned: 72 Modelled: 83 Confidence: 49.5% Identity: 35% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: Protein serine/threonine phosphatase Phyre2 PDB 1s70 chain A Region: 247 - 347 Aligned: 87 Modelled: 99 Confidence: 45.0% Identity: 24% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: Protein serine/threonine phosphatase Phyre2 PDB 1s95 chain A Region: 266 - 347 Aligned: 71 Modelled: 82 Confidence: 42.7% Identity: 24% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: Protein serine/threonine phosphatase Phyre2 PDB 2zbm chain A Region: 297 - 346 Aligned: 42 Modelled: 50 Confidence: 42.7% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:protein-tyrosine-phosphatase; PDBTitle: crystal structure of i115m mutant cold-active protein2 tyrosine phosphatase Phyre2 PDB 3icf chain B Region: 247 - 346 Aligned: 87 Modelled: 100 Confidence: 39.1% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:serine/threonine-protein phosphatase t; PDBTitle: structure of protein serine/threonine phosphatase from saccharomyces2 cerevisiae with similarity to human phosphatase pp5 Phyre2 PDB 2qjc chain A Region: 200 - 346 Aligned: 76 Modelled: 93 Confidence: 33.3% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:diadenosine tetraphosphatase, putative; PDBTitle: crystal structure of a putative diadenosine tetraphosphatase Phyre2 PDB 2dfj chain A Region: 317 - 349 Aligned: 25 Modelled: 33 Confidence: 31.1% Identity: 28% PDB header:hydrolase Chain: A: PDB Molecule:diadenosinetetraphosphatase; PDBTitle: crystal structure of the diadenosine tetraphosphate2 hydrolase from shigella flexneri 2a Phyre2 PDB 2nxf chain A domain 1 Region: 288 - 382 Aligned: 87 Modelled: 95 Confidence: 28.9% Identity: 14% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: ADPRibase-Mn-like Phyre2 PDB 1oid chain A Region: 295 - 432 Aligned: 119 Modelled: 136 Confidence: 28.1% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:protein usha; PDBTitle: 5'-nucleotidase (e. coli) with an engineered disulfide2 bridge (s228c, p513c) Phyre2 PDB 1ii7 chain A Region: 288 - 346 Aligned: 51 Modelled: 59 Confidence: 24.1% Identity: 20% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: DNA double-strand break repair nuclease Phyre2 PDB 2jog chain A Region: 247 - 347 Aligned: 87 Modelled: 99 Confidence: 23.5% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:calmodulin-dependent calcineurin a subunit alpha PDBTitle: structure of the calcineurin-nfat complex Phyre2 PDB 2wdf chain A Region: 303 - 359 Aligned: 44 Modelled: 57 Confidence: 22.7% Identity: 11% PDB header:hydrolase Chain: A: PDB Molecule:sulfur oxidation protein soxb; PDBTitle: termus thermophilus sulfate thiohydrolase soxb Phyre2 PDB 1p0o chain A Region: 157 - 175 Aligned: 19 Modelled: 19 Confidence: 22.6% Identity: 32% PDB header:ribosome Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1; PDBTitle: hp (2-20) substitution of trp for gln and asp at position2 17 and 19 modification in sds-d25 micelles Phyre2 PDB 1wao chain 4 Region: 297 - 346 Aligned: 39 Modelled: 50 Confidence: 22.5% Identity: 41% PDB header:hydrolase Chain: 4: PDB Molecule:serine/threonine protein phosphatase 5; PDBTitle: pp5 structure Phyre2 PDB 1uf3 chain A Region: 302 - 346 Aligned: 37 Modelled: 45 Confidence: 20.4% Identity: 8% Fold: Metallo-dependent phosphatases Superfamily: Metallo-dependent phosphatases Family: TT1561-like Phyre2 1 d3c5wc1 2 d1jk7a_ 3 d2p6ba1 4 c2p6bC_ 5 c1auiA_ 6 d1auia_ 7 d1s70a_ 8 d1s95a_ 9 c2zbmA_ 10 c3icfB_ 11 c2qjcA_ 12 c2dfjA_ 13 d2nxfa1 14 c1oidA_ 15 d1ii7a_ 16 c2jogA_ 17 c2wdfA_ 18 c1p0oA_ 19 c1wao4_ 20 d1uf3a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d3c5wc1 73.4 21 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 2 d1jk7a_ 59.2 21 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 3 d2p6ba1 52.1 28 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 4 c2p6bC_ 51.7 28 PDB header:hydrolase/hydrolase regulator Chain: C: PDB Molecule:calmodulin-dependent calcineurin a subunit alpha PDBTitle: crystal structure of human calcineurin in complex with2 pvivit peptide 5 c1auiA_ 49.5 35 PDB header:hydrolase Chain: A: PDB Molecule:serine/threonine phosphatase 2b; PDBTitle: human calcineurin heterodimer 6 d1auia_ 49.5 35 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 7 d1s70a_ 45.0 24 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 8 d1s95a_ 42.7 24 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 9 c2zbmA_ 42.7 26 PDB header:hydrolase Chain: A: PDB Molecule:protein-tyrosine-phosphatase; PDBTitle: crystal structure of i115m mutant cold-active protein2 tyrosine phosphatase 10 c3icfB_ 39.1 22 PDB header:hydrolase Chain: B: PDB Molecule:serine/threonine-protein phosphatase t; PDBTitle: structure of protein serine/threonine phosphatase from saccharomyces2 cerevisiae with similarity to human phosphatase pp5 11 c2qjcA_ 33.3 21 PDB header:hydrolase Chain: A: PDB Molecule:diadenosine tetraphosphatase, putative; PDBTitle: crystal structure of a putative diadenosine tetraphosphatase 12 c2dfjA_ 31.1 28 PDB header:hydrolase Chain: A: PDB Molecule:diadenosinetetraphosphatase; PDBTitle: crystal structure of the diadenosine tetraphosphate2 hydrolase from shigella flexneri 2a 13 d2nxfa1 28.9 14 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:ADPRibase-Mn-like 14 c1oidA_ 28.1 16 PDB header:hydrolase Chain: A: PDB Molecule:protein usha; PDBTitle: 5'-nucleotidase (e. coli) with an engineered disulfide2 bridge (s228c, p513c) 15 d1ii7a_ 24.1 20 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:DNA double-strand break repair nuclease 16 c2jogA_ 23.5 23 PDB header:hydrolase Chain: A: PDB Molecule:calmodulin-dependent calcineurin a subunit alpha PDBTitle: structure of the calcineurin-nfat complex 17 c2wdfA_ 22.7 11 PDB header:hydrolase Chain: A: PDB Molecule:sulfur oxidation protein soxb; PDBTitle: termus thermophilus sulfate thiohydrolase soxb 18 c1p0oA_ 22.6 32 PDB header:ribosome Chain: A: PDB Molecule:19-mer peptide from 50s ribosomal protein l1; PDBTitle: hp (2-20) substitution of trp for gln and asp at position2 17 and 19 modification in sds-d25 micelles 19 c1wao4_ 22.5 41 PDB header:hydrolase Chain: 4: PDB Molecule:serine/threonine protein phosphatase 5; PDBTitle: pp5 structure 20 d1uf3a_ 20.4 8 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:TT1561-like 21 c2kkrA_ not modelled 19.4 29 PDB header:transcription, protein binding Chain: A: PDB Molecule:ataxin-7; PDBTitle: solution structure of sca7 zinc finger domain from human ataxin-72 protein 22 d1xm7a_ not modelled 15.0 22 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Hypothetical protein aq 1666 23 d1qfxa_ not modelled 14.6 12 Fold:Phosphoglycerate mutase-like Superfamily:Phosphoglycerate mutase-like Family:Histidine acid phosphatase 24 d1pv8a_ not modelled 13.6 43 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 25 c2aklA_ not modelled 13.2 53 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa 26 c3alxB_ not modelled 13.2 24 PDB header:viral protein/membrane protein Chain: B: PDB Molecule:hemagglutinin, cdw150; PDBTitle: crystal structure of the measles virus hemagglutinin bound to its2 cellular receptor slam (mv-h(l482r)-slam(n102h/r108y) fusion) 27 d2akka1 not modelled 13.0 47 Fold:SH3-like barrel Superfamily:Prokaryotic SH3-related domain Family:PhnA-like 28 d1qcsa2 not modelled 12.6 25 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 29 d2q4ma1 not modelled 12.5 22 Fold:Tubby C-terminal domain-like Superfamily:Tubby C-terminal domain-like Family:At5g01750-like 30 c1zxuA_ not modelled 12.5 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:at5g01750 protein; PDBTitle: x-ray structure of protein from arabidopsis thaliana2 at5g01750 31 d2akla1 not modelled 12.5 53 Fold:SH3-like barrel Superfamily:Prokaryotic SH3-related domain Family:PhnA-like 32 c2jwlB_ not modelled 11.7 27 PDB header:membrane protein Chain: B: PDB Molecule:protein tolr; PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data 33 d1s04a_ not modelled 11.4 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 34 c3av0A_ not modelled 11.3 26 PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11-rad50 bound to atp s 35 c2k2bA_ not modelled 11.3 64 PDB header:transport protein Chain: A: PDB Molecule:degenerin mec-4; PDBTitle: sparse-constraint solution nmr structure of micelle-2 solublized cytosolic amino terminal domain of c. elegans3 mechanosensory ion channel subunit mec-4. new york4 consortium on membrane protein structure (nycomps) (casp5 target) 36 d2z1aa2 not modelled 11.0 18 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain 37 c2eqxA_ not modelled 10.6 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:kelch repeat and btb domain-containing protein 4; PDBTitle: solution structure of the back domain of kelch repeat and2 btb domain-containing protein 4 38 c3auzA_ not modelled 10.3 26 PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11 with manganese 39 d1g5ba_ not modelled 9.5 26 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 40 d1myna_ not modelled 9.1 58 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Scorpion toxin-like Family:Insect defensins 41 c3letB_ not modelled 8.6 53 PDB header:transferase Chain: B: PDB Molecule:adenosine monophosphate-protein transferase vops; PDBTitle: crystal structure of fic domain containing ampylator, vops 42 c1s3mA_ not modelled 8.3 28 PDB header:phosphodiesterase Chain: A: PDB Molecule:hypothetical protein mj0936; PDBTitle: structural and functional characterization of a novel2 archaeal phosphodiesterase 43 d1s3la_ not modelled 8.3 28 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:YfcE-like 44 c2hb0B_ not modelled 7.4 36 PDB header:cell adhesion Chain: B: PDB Molecule:cfa/i fimbrial subunit e; PDBTitle: crystal structure of cfae, the adhesive subunit of cfa/i2 fimbria of enterotoxigenic escherichia coli 45 c2vvxA_ not modelled 6.7 16 PDB header:viral protein Chain: A: PDB Molecule:protein a52; PDBTitle: structure of vaccinia virus protein a52 46 c3ps0C_ not modelled 6.7 26 PDB header:rna binding protein Chain: C: PDB Molecule:crispr-associated protein, csa2; PDBTitle: the structure of the crispr-associated protein, csa2, from sulfolobus2 solfataricus 47 d1p42a2 not modelled 6.7 31 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC 48 c3qfkA_ not modelled 6.6 16 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: 2.05 angstrom crystal structure of putative 5'-nucleotidase from2 staphylococcus aureus in complex with alpha-ketoglutarate 49 c3f83A_ not modelled 6.5 36 PDB header:cell adhesion Chain: A: PDB Molecule:fusion of the minor pilin cfae and major pilin cfab; PDBTitle: structure of fusion complex of the minor pilin cfae and major pilin2 cfab of cfa/i pili from etec e. coli 50 c3lybC_ not modelled 6.4 19 PDB header:hydrolase Chain: C: PDB Molecule:putative endoribonuclease; PDBTitle: structure of putative endoribonuclease(kp1_3112) from2 klebsiella pneumoniae 51 c3c9fB_ not modelled 6.3 23 PDB header:hydrolase Chain: B: PDB Molecule:5'-nucleotidase; PDBTitle: crystal structure of 5'-nucleotidase from candida albicans sc5314 52 c3zu0A_ not modelled 6.2 24 PDB header:hydrolase Chain: A: PDB Molecule:nad nucleotidase; PDBTitle: structure of haemophilus influenzae nad nucleotidase (nadn) 53 c2vxdA_ not modelled 6.2 46 PDB header:nuclear protein Chain: A: PDB Molecule:nucleophosmin; PDBTitle: the structure of the c-terminal domain of nucleophosmin 54 c2dbhA_ not modelled 6.2 38 PDB header:signaling protein Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily PDBTitle: solution structure of the carboxyl-terminal card-like2 domain in human tnfr-related death receptor-6 55 c3fvyA_ not modelled 6.1 20 PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl-peptidase 3; PDBTitle: crystal structure of human dipeptidyl peptidase iii 56 d1uoya_ not modelled 6.1 64 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Bubble protein Family:Bubble protein 57 d1cr5a2 not modelled 6.0 30 Fold:Cdc48 domain 2-like Superfamily:Cdc48 domain 2-like Family:Cdc48 domain 2-like 58 d1xnea_ not modelled 5.9 11 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 59 d2f9zc1 not modelled 5.8 40 Fold:CNF1/YfiH-like putative cysteine hydrolases Superfamily:CNF1/YfiH-like putative cysteine hydrolases Family:CheD-like 60 c2xmoB_ not modelled 5.7 30 PDB header:hydrolase Chain: B: PDB Molecule:lmo2642 protein; PDBTitle: the crystal structure of lmo2642 61 c2jgwA_ not modelled 5.7 25 PDB header:immune response Chain: A: PDB Molecule:complement factor h; PDBTitle: structure of ccp module 7 of complement factor h - the amd2 at risk varient (402h) 62 c2ftcB_ not modelled 5.6 17 PDB header:ribosome Chain: B: PDB Molecule:mitochondrial ribosomal protein l2; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 63 c1z8yO_ not modelled 5.6 50 PDB header:virus Chain: O: PDB Molecule:spike glycoprotein e1; PDBTitle: mapping the e2 glycoprotein of alphaviruses 64 c1z8yM_ not modelled 5.6 50 PDB header:virus Chain: M: PDB Molecule:spike glycoprotein e1; PDBTitle: mapping the e2 glycoprotein of alphaviruses 65 c1z8yK_ not modelled 5.6 50 PDB header:virus Chain: K: PDB Molecule:spike glycoprotein e1; PDBTitle: mapping the e2 glycoprotein of alphaviruses 66 c1z8yI_ not modelled 5.6 50 PDB header:virus Chain: I: PDB Molecule:spike glycoprotein e1; PDBTitle: mapping the e2 glycoprotein of alphaviruses 67 d1g40a2 not modelled 5.4 38 Fold:Complement control module/SCR domain Superfamily:Complement control module/SCR domain Family:Complement control module/SCR domain 68 c2o42B_ not modelled 5.4 34 PDB header:apoptosis inhibitor Chain: B: PDB Molecule:m11l protein; PDBTitle: crystal structure of m11l, bcl-2 homolog from myxoma virus 69 d1hcca_ not modelled 5.3 25 Fold:Complement control module/SCR domain Superfamily:Complement control module/SCR domain Family:Complement control module/SCR domain 70 c1hccA_ not modelled 5.3 25 PDB header:glycoprotein Chain: A: PDB Molecule:16th complement control protein; PDBTitle: three-dimensional structure of a complement control protein2 module in solution 71 d1twda_ not modelled 5.2 18 Fold:TIM beta/alpha-barrel Superfamily:CutC-like Family:CutC-like 72 c4a1aM_ not modelled 5.2 15 PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l5; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0