Job Description P0AAA3 Confidence 12.06% Date Thu Jan 5 11:12:20 GMT 2012 Rank 7 Aligned Residues 78 % Identity 28% Template c2qqpG_ PDB info PDB header:virus Chain: G: PDB Molecule:large capsid protein; PDBTitle: crystal structure of authentic providence virus Resolution 3.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.																							.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.																		.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.																		.	.
Query Sequence		P	L	G	S	L	A	F	Q	Y	A	E	G	I	K	G	F	N	S	Q	K	G	L	F	D	V	A	I	E	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	A	T	A	.	F	K	L	T	S	R	L	I	T	N	T	L	T	Q	L	D	T	.	.	S	G	S
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.																		.	.
Alig confidence															.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.																		.	.
Template Conservation															.
Template Sequence		P	V	A	T	V	A	L	T	T	G	T	G	G	.	T	N	N	T	S	G	K	F	F	S	V	E	I	D	G	N	V	N	S	V	W	T	F	T	A	P	A	S	I	L	A	E	G	E	P	F	A	E	E	G	D	T	T	S	F	S	M	T	T	I	T	A	D	T	V	V	Y	S	V	S	S	S	L	T	G	S
Template Known Secondary structure										B	S	S			.						S	S										T	T									S					T	T						S	S												S	S										S	T	T
Template Predicted Secondary structure															.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	N	V	G	V	D	Y	N	G	A	A	V	E	K	T	G	D	T	V	M	I	D	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	I	V	R	G	V	T	K	G	S	G	V	S	I	T	P	V	T	V	G	I	D	T
Template Known Secondary structure										T	T	B		B								S	S		B
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions