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Job DescriptionP0AG38
Confidence1.30%DateThu Jan 5 11:28:02 GMT 2012
Rank21Aligned Residues147
% Identity7%Templatec3ddlB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:xanthorhodopsin; PDBTitle: crystallographic structure of xanthorhodopsin, a light-2 driven ion pump with dual chromophore
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60. ........70.........80.........90.......
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Query Sequence  PDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGIALLGLH. . . LIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKE
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Template Sequence  PLLTVELVLVMGLPKNERGPLAAKLGFLAALMIVLGYPGEVSENAALFGTRGLWGFLSTIPFVWILYILFTQLGDTIQRQ
Template Known Secondary structure  S


T
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   102.......110.........120.........130.........140.........150.........160.........170.........180.
 
   98.100.........110.........120.........130.........140.........150.........160.........170.......
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Query Sequence  AVSAPAPQVELAKSGRSFLKGLLTNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVETLAWFTVVASLFALPQMR
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Template Sequence  SSR. . . . . . . . . . . . . . . VSTLLGNARLLLLATWGFYPIAYMIPMANTPGTIVALQVGYTIADVLAKAGYGVLIYNIAKA
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   182.. .....190.........200.........210.........220.........230.........240......
 
   178.180..
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Query Sequence  RGYQR
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Template Sequence  KSEEE
Template Known Secondary structure  T
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   254....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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