Job Description P0AG38 Confidence 6.53% Date Thu Jan 5 11:28:02 GMT 2012 Rank 1 Aligned Residues 113 % Identity 3% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	M	L	F	L	T	V	A	M	V	H	I	V	A	L	M	S	P	G	P	D	F	F	F	V	S	Q	T	A	V	S	R	S	R	K	E	A	M	M	G	V	L	G	I	T	C	G	V	M	V	W	A	G	I	A	L	L	G	L	H	L	I	I	E	K	M	A	W	L	H	T	L	I	M	V	G	G	G	L
Query Conservation
Alig confidence																																																																	.
Template Conservation																																																																	.
Template Sequence		X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L	.	S	N	L	Q	N	V	T	I	V	A	A	T	P	F	L	F
Template Known Secondary structure																													T	T	T	T		S	S																									G	G	G			.
Template Predicted Secondary structure																																																																	.
Template SS confidence
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.		.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	C	W	M	G	Y	Q	M	L	R	G	A	L	K	K	E	A	V	S	A	P	A	P	Q	V	E	L	A	K	S	G	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R	E	Q	Q	R	F	N	A	R	L	A	R
Template Known Secondary structure																T
Template Predicted Secondary structure
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions