 |
Job Description | Q9JMS4 | Confidence | 2.17% | Date | Wed Jan 25 15:21:16 GMT 2012 |
Rank | 39 | Aligned Residues | 18 |
% Identity | 44% | Template | c1bmxA_ |
PDB info |
PDB header:viral protein | Chain: A: PDB Molecule:human immunodeficiency virus type 1 capsid; |
PDBTitle: hiv-1 capsid protein major homology region peptide analog,2 nmr, 8 structures
|
Resolution | UNK |
|
  |   |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . |
Predicted Secondary structure |   |
 |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | T | P | K | E | G | L | S | F | A | M | T | T | Y | L | N | L | F | V | K | L | L |
Query Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
| . | . | . | . |   |
|
|   |
|
|
|
|
|
|
|   |
|
Template Sequence |   |
Q | G | P | K | E | . |
. |
. |
. |
P | F | R | D | Y | V | D | R | F | Y | K | T | L |
Template Known Secondary structure |   |
|
|
|
|  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
8 | . | 10 | . | . | |
|
|
|
. | . | . | . | . | . | . | 20 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|