Return to main results Retrieve Phyre Job Id

Job DescriptionP75820
Confidence100.00%DateThu Jan 5 12:14:33 GMT 2012
Rank5Aligned Residues130
% Identity22%Templated1yb0a1
SCOP infoN-acetylmuramoyl-L-alanine amidase-like N-acetylmuramoyl-L-alanine amidase-like N-acetylmuramoyl-L-alanine amidase-like
Resolution1.86

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50..... ....60...... ...70.........80.........90.........100.........110...
Predicted Secondary structure 












..

..

































Query SS confidence 

















. .










. .














































Query Sequence  QAAYPRIKVLVIHYTADD. . FDSSLATLTDK. . QVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLND
Query Conservation       

  



 

  ..   

  
   .. 






         

 
 
 
 
   




 
 
 
    
 
Alig confidence 

















..










..







........
























....

Template Conservation        
  



 

                  

 
  
........  
 
         
 
 
      ....
 
Template Sequence  CPYTMKPKYITVHNTYNDAPAENEVNYMITNNNEVSFHVAV. . . . . . . . DDKQAIQGIPWERNAWACGDGNGPG. . . . NR
Template Known Secondary structure 

SB




SS


S
SS


S........
SS

S
TTB

S
SS
SSS....
Template Predicted Secondary structure 




















........



















....

Template SS confidence 















































































   17..20.........30.........40.........50....... ..60.........70.........80.. ..
 
   114.....120.........130.........140.........150.........160.........170.........180.. .......
Predicted Secondary structure 



































...
Query SS confidence 




































































. . .






Query Sequence  TSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPLFP. . . WQQLAQQ
Query Conservation   





 
 
               

  

  
   
  

 

   



 



 

 


  

...
  
   
Alig confidence 














........
































..










...






Template Conservation   




  
      ........   

  
   
 
 
   



   
  
 
 ..  
 


       
      
Template Sequence  ESISVEICYSKSGGD. . . . . . . . RYYKAENNAVDVVRQLMSMYNIPIENVRTHQSW. . SGKYCPHRMLAEGRWGAFIQK
Template Known Secondary structure  TTTTT
........T

GGG..



STT
Template Predicted Secondary structure 







........









..













Template SS confidence 














































































   85....90......... 100.........110.........120.........130.. .......140.........150...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions