Job Description P75820 Confidence 99.88% Date Thu Jan 5 12:14:33 GMT 2012 Rank 20 Aligned Residues 138 % Identity 19% Template c3ep1B_ PDB info PDB header:immune system Chain: B: PDB Molecule:pgrp-hd - peptidoglycan recognition protein PDBTitle: structure of the pgrp-hd from alvinella pompejana Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.												.	.	.	60	.	.	.	.	.								.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Query Sequence		K	G	I	V	E	K	E	G	Y	Q	L	D	T	R	R	Q	A	Q	A	A	Y	P	R	I	K	V	L	V	I	H	Y	T	A	D	D	F	.	.	.	.	.	.	.	.	.	.	.	D	S	S	L	A	T	L	T	D	.	.	.	.	.	.	.	K	Q	V	S	S	H	Y	L	V	P	A	V	P	P	R	Y	N
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.
Template Sequence		D	S	I	V	P	R	Q	Q	W	A	A	I	E	P	R	R	Q	I	K	M	N	G	R	A	D	E	I	F	L	W	Q	T	G	P	D	T	C	S	G	C	L	Q	D	S	S	C	T	E	Q	I	V	K	A	L	Q	D	A	D	F	K	E	G	N	D	D	I	K	Y	N	F	L	I	.	.	.	.	.	.	.	D
Template Known Secondary structure					B		T	T	T	T	T					S				B		S	S												T	T	T	T			T	T	T	T	T	T	T															T	T		S	S		S		S				.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.								.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	P	R	I	W	Q	L	V	P	E	Q	E	L	A	W	H	A	G	I	S	A	W	R	G	A	T	R	L	N	D	T	S	I	G	I	E	L	E	N	R	G	W	Q	K	S	A	G	V	K	Y	F	A	P	F	E	P	A	Q	I	Q	A	L	I	P	L	A	K	D	I	I	A	R	Y	H	I	K	P	E	N
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																									.	.
Template Conservation																							.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																									.	.
Template Sequence		Q	D	G	V	I	Y	E	G	R	G	W	G	V	V	G	Q	H	T	K	G	R	.	.	.	.	.	.	.	.	D	S	H	S	I	G	V	A	V	I	G	D	F	G	K	K	E	.	.	.	.	.	.	.	.	P	S	Q	A	L	Q	D	A	L	S	K	L	I	I	C	G	Q	A	A	E	E	L	S	S	.	.
Template Known Secondary structure		T	T	S					S	S		T	T	B			S	S	S	T	T		.	.	.	.	.	.	.	.		T	T							S	S			S	S	S		.	.	.	.	.	.	.	.																			T	T	S				.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																									.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.									180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.									.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	A	H	A	D	I	A	P	Q	R	K	D	D	P	G	P	L	F	P	W	Q	Q	L	A	Q
Query Conservation
Alig confidence		.	.						.	.											.
Template Conservation		.	.						.	.											.
Template Sequence		.	.	G	A	R	L	R	.	.	T	T	P	A	M	S	G	Q	A	F	.	Y	D	M	L	D	R
Template Known Secondary structure		.	.						.	.											.
Template Predicted Secondary structure		.	.						.	.											.
Template SS confidence
				221	.	.	.	.			.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions