Job Description P75820 Confidence 99.23% Date Thu Jan 5 12:14:33 GMT 2012 Rank 21 Aligned Residues 108 % Identity 13% Template c2xz8A_ PDB info PDB header:immune system Chain: A: PDB Molecule:peptidoglycan-recognition protein lf; PDBTitle: crystal structure of the lfw ectodomain of the2 peptidoglycan recognition protein lf Resolution 1.94 Å

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		23	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.					.	.	.	.	.	60	.	.	.	.	.												.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure														.																					.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.																					.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	V	E	K	E	G	Y	Q	L	D	T	R	.	R	Q	A	Q	A	A	Y	P	R	I	K	V	L	V	I	H	Y	T	A	D	.	.	.	.	D	F	D	S	S	L	A	T	L	T	D	.	.	.	.	.	.	.	.	.	.	.	K	Q	V	S	S	H	Y	L	V	P	A	V	P	P	R	Y	N	G	K	P	R
Query Conservation														.																					.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.																					.	.	.	.												.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.
Template Sequence		I	V	T	R	P	Y	W	L	A	Q	P	P	I	V	P	L	T	P	L	K	L	P	I	E	S	V	R	F	V	A	T	N	T	P	S	C	F	T	Q	A	E	C	T	F	R	V	R	L	L	Q	N	W	H	I	E	S	N	G	Y	K	D	I	N	Y	N	F	V	A	.	.	.	.	.	.	.	A	G	D	E	N
Template Known Secondary structure					G	G	G	G	T					S	S				B			S	S											S					S																		T	T			S	S		S		S				.	.	.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.								.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	W	Q	L	V	P	E	Q	E	L	A	W	H	A	G	I	S	A	W	R	G	A	T	R	L	N	D	T	S	I	G	I	E	L	E	N	R	G	W	Q	K	S	A	G	V	K	Y	F	A	P	F	E	P	A	Q	I	Q	A	L	I	P	L	A	K	D	I	I	A	R	Y	H	I	K	P	E
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	Y	E	A	R	G	W	D	H	S	C	E	P	P	K	.	.	.	.	.	.	.	.	.	.	D	A	D	E	L	V	V	A	F	I	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	N	K	K	I	A	L	E	L	I	K	Q	G	I	K	L	G	H	I	S	K	N
Template Known Secondary structure					S	S		S	S	B				T	T	S	.	.	.	.	.	.	.	.	.	.		T	T							S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.											.	.	.	.	.	.	330	.	.	.	.	.															.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions