Job Description P75820 Confidence 99.95% Date Thu Jan 5 12:14:33 GMT 2012 Rank 9 Aligned Residues 142 % Identity 19% Template c2xz4A_ PDB info PDB header:immune system Chain: A: PDB Molecule:peptidoglycan-recognition protein lf; PDBTitle: crystal structure of the lfz ectodomain of the2 peptidoglycan recognition protein lf Resolution 1.72 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.					.	.	.	.	.	60	.	.	.	.	.												.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure															.																				.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.																				.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	V	E	K	E	G	Y	Q	L	D	T	R	R	.	Q	A	Q	A	A	Y	P	R	I	K	V	L	V	I	H	Y	T	A	D	.	.	.	.	D	F	D	S	S	L	A	T	L	T	D	.	.	.	.	.	.	.	.	.	.	.	K	Q	V	S	S	H	Y	L	V	P	A	V	P	P	R	Y	N	G	K	P	R
Query Conservation															.																				.	.	.	.												.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																				.	.	.	.												.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.
Template Sequence		I	L	D	R	S	E	W	L	G	E	P	P	S	G	K	Y	P	H	L	K	L	P	V	S	N	I	I	I	H	H	T	A	T	E	G	C	E	Q	E	D	V	C	I	Y	R	M	K	T	I	Q	A	F	H	M	K	S	F	G	W	V	D	I	G	Y	N	F	L	V	.	.	.	.	.	.	.	G	G	D	G	Q
Template Known Secondary structure					T	T	T	T	T					S	S				B			S	S										S	S					S																		T	S			S	S		S		S				.	.	.	.	.	.	.		T	T	S
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.								.	.	.	130	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		I	W	Q	L	V	P	E	Q	E	L	A	W	H	A	G	I	S	A	W	R	G	A	T	R	L	N	D	T	S	I	G	I	E	L	E	N	R	G	W	Q	K	S	A	G	V	K	Y	F	A	P	F	E	P	A	Q	I	Q	A	L	I	P	L	A	K	D	I	I	A	R	Y	H	I	K	P	E	.	N	V	V	A
Query Conservation																																																																													.
Alig confidence																			.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																										.
Template Conservation																			.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Sequence		I	Y	V	G	R	G	W	H	I	Q	G	Q	H	V	N	G	Y	.	.	.	.	.	.	.	.	G	A	I	S	V	S	I	A	F	I	G	T	F	V	N	M	E	.	.	.	.	.	.	.	.	P	P	A	R	Q	I	E	A	A	K	R	L	M	D	E	G	V	R	L	H	R	L	Q	P	D	Y	H	I	Y	A
Template Known Secondary structure					S	S		S	S	B					S	S			.	.	.	.	.	.	.	.			S							S	S			S	S	S		.	.	.	.	.	.	.	.																			T	T	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.									.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.									.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.						.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		H	A	D	I	A	P	Q	R	K	D	D	P	G	P	L	F	.	.	.	.	.	P	W	Q	Q	L	A	Q	Q
Query Conservation																		.	.	.	.	.
Alig confidence								.	.									.	.	.	.	.
Template Conservation								.	.
Template Sequence		H	R	Q	L	S	P	.	.	T	E	S	P	G	Q	K	L	F	E	L	M	Q	N	W	P	R	F	T	Q	D
Template Known Secondary structure						S	S	.	.	S		T	T									T	T	S	T	T	B
Template Predicted Secondary structure								.	.
Template SS confidence
		196	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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