Job Description P77439 Confidence 100.00% Date Thu Jan 5 12:29:20 GMT 2012 Rank 8 Aligned Residues 276 % Identity 29% Template d1vbga1 SCOP info TIM beta/alpha-barrel Phosphoenolpyruvate/pyruvate domain Pyruvate phosphate dikinase, C-terminal domain Resolution 2.30

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		374	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.											.	.	.	.	420	.												.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure						.																																							.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.																																							.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	N	K	R	.	I	D	I	A	A	N	I	G	T	A	L	E	A	P	G	A	F	A	N	G	A	E	G	V	G	L	F	R	T	E	M	L	Y	M	D	R	D	S	.	.	.	.	.	.	.	.	.	.	A	P	D	E	Q	E	.	.	.	.	.	.	.	.	.	.	.	Q	F	E	A	Y	Q	Q	V	L	L
Query Conservation						.																																							.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																																							.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	D	V	R	K	L	K	V	L	A	N	A	D	T	P	D	D	A	L	T	A	R	N	N	G	A	Q	G	I	G	L	C	R	T	E	H	M	F	F	A	S	D	E	R	I	K	A	V	R	Q	M	I	M	A	P	T	L	E	L	R	Q	Q	A	L	D	R	L	L	P	Y	Q	R	S	D	F	E	G	I	F	R
Template Known Secondary structure							S							S	S										T	T			S											T	T															S	S
Template Predicted Secondary structure
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.																									.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	G	D	K	P	I	I	F	R	T	M	D	I	G	G	D	K	S	I	P	Y	L	N	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	E	E	N	P	F	L	G	Y	R	A	V	R	I	Y	P	E	F	A	G	L	F	R	T	Q	L	R	A	I	L
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	M	D	G	L	P	V	T	I	R	L	L	D	P	P	L	H	E	F	L	P	E	G	N	I	E	D	I	V	S	E	L	C	A	E	T	G	A	N	Q	E	D	A	L	A	R	I	E	K	L	S	E	V	N	P	M	L	G	F	R	G	C	R	L	G	I	S	Y	P	E	L	T	E	M	Q	A	R	A	I	F
Template Known Secondary structure			T	T	T	S									S		G	G	G	G	S			S																														S		G	G	G	S	S		T							S
Template Predicted Secondary structure
Template SS confidence
		612	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.
		488	.	490	.	.	.	.								.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure									.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.
Query Sequence		R	A	A	S	F	G	N	.	.	.	.	.	.	.	A	Q	L	M	I	P	M	V	H	S	L	D	Q	I	L	W	V	K	G	E	I	Q	K	A	I	V	E	L	K	R	D	G	L	R	H	A	E	T	I	T	L	G	I	M	V	E	V	P	S	V	C	Y	I	I	D	H	F	C	D	E	V	D	F	F	S	I
Query Conservation									.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.																																			.
Template Conservation																																																		.
Template Sequence		E	A	A	I	A	M	T	N	Q	G	V	Q	V	F	P	E	I	M	V	P	L	V	G	T	P	Q	E	L	G	H	Q	V	T	L	I	R	Q	V	A	E	K	V	F	A	N	V	G	K	.	T	I	G	Y	K	V	G	T	M	I	E	I	P	R	A	A	L	V	A	D	E	I	A	E	Q	A	E	F	F	S	F
Template Known Secondary structure									T	T	T											S			S																							T		.												S						T					T	T	T		S
Template Predicted Secondary structure																																																		.
Template SS confidence
		692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.		740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.														.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.			.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Query Sequence		G	S	N	D	M	T	Q	Y	L	Y	A	V	D	R	N	N	P	R	V	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	N	P	I	T	P	S	F	L	R	M	L	Q	Q	I	V	T	T	A	H	Q	R	.	.	G	K	W	V	G	I	C	G	E	L	G	G	E	S	R	Y	L	P	L	L	L
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation
Template Sequence		G	T	N	D	L	T	Q	M	T	F	G	Y	S	R	D	D	V	G	K	F	I	P	V	Y	L	A	Q	G	I	L	Q	H	D	P	F	E	V	L	D	Q	R	G	V	G	E	L	V	K	F	A	T	E	R	G	R	K	A	R	P	N	L	K	V	G	I	C	G	E	H	G	G	E	P	S	S	V	A	F	F	A
Template Known Secondary structure												T			T	T	T	G	G	G	T							T	T	S		S	S		T	T	T	S			T	T	T																S	T	T							S	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		771	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850
		626	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	G	L	D	E	L	S	M	S	S	P	R	I	P	A	V	K	S	Q	L	R	Q	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	G	L	D	Y	V	S	C	S	P	F	R	V	P	I	A	R	L	A	A	A	Q	V	L
Template Known Secondary structure			T	T		S						G	G	G											T	T
Template Predicted Secondary structure
Template SS confidence
		851	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions