Job Description P77439 Confidence 100.00% Date Thu Jan 5 12:29:20 GMT 2012 Rank 9 Aligned Residues 280 % Identity 29% Template d1h6za1 SCOP info TIM beta/alpha-barrel Phosphoenolpyruvate/pyruvate domain Pyruvate phosphate dikinase, C-terminal domain Resolution 3.00

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		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.																					.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	R	I	D	I	A	A	N	I	G	T	A	L	E	A	P	G	A	F	A	N	G	A	E	G	V	G	L	F	R	T	E	M	L	Y	M	D	R	D	S	A	P	D	E	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	F	E	A	Y	Q	Q	V	L	L	A	A	G	D
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	R	L	G	V	R	T	N	A	D	T	P	A	D	A	A	K	A	R	S	F	G	A	E	G	V	G	L	C	R	T	E	H	M	F	F	E	G	S	R	I	N	F	I	R	E	M	I	L	A	D	S	A	S	G	R	K	A	A	L	D	K	L	L	P	I	Q	R	A	D	F	V	G	I	L	R	A	M	R	G
Template Known Secondary structure				S							S	S									T	T	T			S					B		S	G	G	G	S	T	T	T										S		S	S																								T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.																							.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	P	I	I	F	R	T	M	D	I	G	G	D	K	S	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	N	I	P	Q	E	E	N	P	F	L	G	Y	R	A	V	R	I	Y	P	E	F	A	G	L	F	R	T	Q	L	R	A	I	L	R	A	A	S	F	G
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	V	T	I	R	L	L	D	P	P	L	H	E	F	V	P	H	D	A	A	A	Q	F	E	L	A	Q	K	L	G	M	P	A	E	K	V	R	N	R	V	N	A	L	H	E	L	N	P	M	L	G	H	R	G	C	R	L	G	I	T	Y	P	E	I	Y	N	M	Q	V	R	A	I	I	E	A	A	I	A	V
Template Known Secondary structure		S									S		G	G	G	G			S	S		S	S	T	T	T	T	S		S	S	S												S	S			S	S	S	T	T	S	S									S	T	T
Template Predicted Secondary structure
Template SS confidence
		637	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.
									494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	N	A	Q	L	M	I	P	M	V	H	S	L	D	Q	I	L	W	V	K	G	E	I	Q	K	A	I	V	E	L	K	R	D	G	L	R	H	A	E	T	I	T	L	G	I	M	V	E	V	P	S	V	C	Y	I	I	D	H	F	C	D	E	V	D	F	F	S	I	G	S	N	D	M	T
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																		.
Template Conservation																																										.
Template Sequence		S	E	E	G	S	S	V	I	P	E	I	M	V	P	L	V	G	K	K	E	E	L	S	L	I	R	E	E	V	V	K	T	A	E	A	V	I	T	K	S	.	G	K	R	V	H	Y	T	V	G	T	M	I	E	V	P	R	A	A	V	T	A	D	S	I	A	Q	K	A	D	F	F	S	F	G	T	N	D	L	T
Template Known Secondary structure			T	T	T														S																						S	.		S												S						T					T	T	T		S						T	T
Template Predicted Secondary structure																																										.
Template SS confidence
		717	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.		.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.
		567	.	.	570	.	.	.	.	.	.	.	.														.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.			.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Query Sequence		Q	Y	L	Y	A	V	D	R	N	N	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	P	L	Y	N	P	I	T	P	S	F	L	R	M	L	Q	Q	I	V	T	T	A	H	Q	R	.	.	G	K	W	V	G	I	C	G	E	L	G	G	E	S	R	Y	L	P	L	L	L	G	L	G	L	D	E
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation
Template Sequence		Q	M	G	C	G	F	S	R	D	D	A	G	P	F	L	R	H	Y	G	N	L	G	I	Y	A	Q	D	P	F	Q	S	I	D	Q	E	G	I	G	E	L	V	R	I	A	V	T	K	G	R	R	V	K	P	M	L	K	M	G	I	C	G	E	H	G	G	D	P	A	T	I	G	F	C	H	K	V	G	L	D	Y
Template Known Secondary structure						T			G	G	G						T	T	T	T	T	T		S	S	S	S		T	T	T	S			T	T	T																S	T	T							S	G	G	G	G												T		S
Template Predicted Secondary structure
Template SS confidence
		796	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.
		632	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	M	S	S	P	R	I	P	A	V	K	S	Q	L	R	Q	L	D	S	E	A	C	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	C	S	P	F	R	V	P	V	A	I	V	A	A	A	H	A	S	I	K	D	R	R	A
Template Known Secondary structure						G	G	G
Template Predicted Secondary structure
Template SS confidence
		876	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions