 |
Job Description | P77439 | Confidence | 98.98% | Date | Thu Jan 5 12:29:20 GMT 2012 |
Rank | 50 | Aligned Residues | 135 |
% Identity | 21% | Template | c3r4iB_ |
PDB info |
PDB header:lyase | Chain: B: PDB Molecule:citrate lyase; |
PDBTitle: crystal structure of a citrate lyase (bxe_b2899) from burkholderia2 xenovorans lb400 at 2.24 a resolution
|
Resolution | 2.24 Å |
|
 |
  |   |
468 | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | V | R | I | Y | P | E | F | A | G | L | F | R | T | Q | L | R | A | I | L | R | A | A | S | F | G | N | A | Q | L | M | I | P | M | V | H | S | L | D | Q | I | L | W | V | K | G | E | I | Q | K | A | I | V | E | L | K | R | D | G | L | R | H | A | E | T | I | T | L | G | I | M | V | E | V | P | S | V | C | Y | I |
Query Conservation |   |
|
|
|   |   |
|   |   |
|   |
|
|   |   |
|
|
|
|
|
|
|
|
|   |   |
|   |
|   |
|
|   |
|
|
|
|   |   |
|
|   |   |   |
|
|   |   |
|   |
|   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|   |   |   |
|   |   |   |   |   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |   | . | . | . | . | . |
|   |   |   |   |
|   |
|   |   |   |
|
|
|
|   |
|
|   |   |
Template Sequence |   |
G | V | R | I | H | D | F | D | H | A | H | W | R | D | D | V | R | L | I | L | R | A | A | K | R | A | P | A | Y | I | T | L | P | K | I | R | H | V | H | D | A | A | E | X | V | A | F | I | E | A | T | R | R | E | L | . |
. |
. |
. |
. |
G | I | A | Q | P | V | P | V | Q | L | L | V | E | T | H | G | A | L | T | R |
Template Known Secondary structure |   |
 |  |  |
|
|
| T | T | S | T | T |  |  |  |  |  |  |  |  |  |  |  |
| S | S |
|
| S |
|  |  |  |
|
|
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | . | . | . | . | . | T |
| S | S |
|
|
|  |  |  |  |  |
| S |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | |
|
|
|
|
. | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
  |
  |   |
548 | . | 550 | . | . | . | |
|
. | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  | . | . |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | D | H | F | C | D | . |
. |
E | V | D | F | F | S | I | G | S | N | D | M | T | Q | Y | L | Y | A | V | D | R | N | N | P | R | V | S | P | L | Y | N | P | I | T | P | S | F | L | R | M | L | Q | Q | I | V | T | T | A | H | Q | R | G | K | W | V |
Query Conservation |   |
|
|   |
|
|   | . | . |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|
|   |
|   |   |
|
|   |
|
|
|   |   |
|
|
|
|
|
|
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|
|   |   |
|
|   |   |
|   |
|
|   |   |
|
|   | . |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |
|
|   |
|   |
|   |   |   |
Template Sequence |   |
V | F | D | L | A | A | L | P | G | V | E | A | L | S | F | G | L | X | D | F | V | . |
S | A | H | D | G | A | I | P | D | T | A | X | R | S | P | G | Q | F | D | H | P | L | V | R | R | A | K | L | E | I | S | A | A | C | H | A | Y | G | K | V | P |
Template Known Secondary structure |   |
 |  |  |  |  | T |
| T | T |  |  |  |  |  |  |
|  |  |  |  |  | . |  | T | T | T | T | S | S |
| G | G | G | G | S | T | T |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|  |  |  |  |  | . |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
159 | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | |
180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|