 |
Job Description | P77439 | Confidence | 96.40% | Date | Thu Jan 5 12:29:20 GMT 2012 |
Rank | 67 | Aligned Residues | 116 |
% Identity | 15% | Template | c3eoeC_ |
PDB info |
PDB header:transferase | Chain: C: PDB Molecule:pyruvate kinase; |
PDBTitle: crystal structure of pyruvate kinase from toxoplasma gondii, 55.m00007
|
Resolution | 2.31 Å |
|
 |
  |   |
472 | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | |
. | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | P | E | F | A | G | L | F | R | T | Q | L | R | A | I | L | R | . |
A | A | S | F | G | N | A | Q | L | M | I | P | M | V | H | S | L | D | Q | I | L | W | V | K | G | E | I | Q | K | A | I | V | E | L | K | R | D | G | L | R | H | A | E | T | I | T | L | G | I | M | V | E | V | P | S | V | C | Y | I | I | D | H |
Query Conservation |   |
  |
|   |   |
|   |
|
|   |   |
|
|
|
|
|
|
| . |
|
|   |   |
|   |
|   |
|
|   |
|
|
|
|   |   |
|
|   |   |   |
|
|   |   |
|   |
|   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |
|
|
|
|
|   |   |
|
|
|   |
|
|   |   |   |   |
|
|   |
|
|   |
|
|
|
|   |   |   |
|
|   |   |   |
|   |   |
|   |   | . | . | . | . | . | . | . | . | . | . | . |   |
|   |   |   |   |
|
|
|
|
|
|   |   |   |
|
|   |
|
|
|
|
Template Sequence |   |
K | V | Q | L | P | V | I | G | E | K | D | K | H | D | I | L | N | F | G | I | P | M | G | C | N | F | I | A | A | S | F | V | Q | S | A | D | D | V | R | Y | I | R | G | L | L | G | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R | G | R | H | I | R | I | I | P | K | I | E | N | V | E | G | L | V | N | F | D | E |
Template Known Secondary structure |   |
|
|
| S |
| S | S |
|  |  |  |  |  |  |  |  |  | T | T | T | T | T | T |
|
|  |  |  |  | T | T |
|
| S |  |  |  |  |  |  |  |  |  |  |  | T | T | . | . | . | . | . | . | . | . | . | . | . | T | T | T | T |
|  |  |  |  |  |  |
| S |  |  |  |  |  | T |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
199 | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . |
  |
  |   |
551 | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | C | D | E | V | D | F | F | S | I | G | S | N | D | M | T | Q | Y | L | Y | A | V | D | R | N | N | P | R | V | S | P | L | Y | N | P | I | T | P | S | F | L | R | M | L | Q | Q | I | V | T | T | A | H | Q | R | G | K | W | V | G | I | C | G | E | L |
Query Conservation |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|
|   |
|   |   |
|
|   |
|
|
|   |   |
|
|
|
|
|
|
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|   |   |
|   |
|
|   |   |
|
|   |
|
|   |   |
|   |   |   |
|
|
|
|
|   |
|
|
|
|
Template Sequence |   |
I | L | A | E | A | D | G | I | M | I | A | R | G | D | L | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
M | E | I | P | P | E | K | V | F | L | A | Q | K | M | M | I | A | K | C | N | V | V | G | K | P | V | I | T | A | T | Q | M |
Template Known Secondary structure |   |
 |  |  |  |
| S |
|  |  |  |  |  |  |  |  | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | T | T | S |
| G | G | G |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  | S | S | S |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
268 | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|