Job Description P77439 Confidence 87.20% Date Thu Jan 5 12:29:20 GMT 2012 Rank 91 Aligned Residues 88 % Identity 15% Template c2v9dB_ PDB info PDB header:lyase Chain: B: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12 Resolution 2.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.							.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																																																															.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.
Query Sequence		A	V	L	D	A	Q	C	G	V	L	A	I	N	P	N	D	A	V	S	G	Y	Y	Q	V	A	Q	T	L	A	D	K	R	Q	K	Q	Q	A	Q	A	A	A	Q	L	A	Y	S	R	D	N	K	R	I	D	I	A	A	N	I	G	T	A	.	.	.	.	.	.	L	E	A	P	G	A	F	A	N	G	A	E	G
Query Conservation																																																															.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	F	L	G	S	G	G	E	F	S	Q	L	G	A	E	E	R	K	A	I	A	R	F	A	I	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	R	R	V	P	V	L	I	G	T	G	G	T	N	A	R	E	T	I	E	L	S	Q	H	A	Q	Q	A	G	A	D	G
Template Known Secondary structure					S	S	T	T	T	T	G	G	G	S																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S	S								S	S																T		S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.																				.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	L	F	R	T	E	M	L	Y	M	D	R	D	S	A	P	D	E	Q	E	Q	F	E	A	Y	Q	Q	V	L	L	A	A	G	D	K	P	I	I	F
Query Conservation
Alig confidence			.	.	.	.	.	.																											.
Template Conservation			.	.	.	.	.	.																											.
Template Sequence		I	.	.	.	.	.	.	V	V	I	N	P	Y	Y	W	K	V	S	E	A	N	L	I	R	Y	F	E	Q	V	A	D	S	V	.	T	L	P	V	X	L
Template Known Secondary structure			.	.	.	.	.	.						S	S	S																			.	S	S
Template Predicted Secondary structure			.	.	.	.	.	.																											.
Template SS confidence
		112							.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions