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Job DescriptionP77439
Confidence100.00%DateThu Jan 5 12:29:20 GMT 2012
Rank6Aligned Residues371
% Identity26%Templatec1vbhA_
PDB info PDB header:transferaseChain: A: PDB Molecule:pyruvate,orthophosphate dikinase; PDBTitle: pyruvate phosphate dikinase with bound mg-pep from maize
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   260.........270.........280.........290.........300.........310...... ...320.......
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Query Sequence  VLEKPTILVAEDLTPSQFLSLDLKNLAGMILEKTGRTSHTLILARASAIPVLSGLPL. . . . . . . . . . . . DAIARYAGQPA
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Template Sequence  SQGKAAILVRAETSPEDVGGM. . HAAVGILTE. . . MTSHAAVVARGWGKCCVSGCSGIRVNDAEKLVTIGGHVLREGEWL
Template Known Secondary structure  TT

SS

TTT..SS
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STTTTTTTT
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   422.......430.........440.. .......450. ........460.........470.........480.........490......
 
   328.330.........340.........350.........360.........370.........380.........390.........400.......
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Query Sequence  VLDAQCGVLAINPNDAVSGYYQVAQTLADKRQKQQAQAAAQLAYSRDNKRIDIAANIGTALEAPGAFANGAEGVGLFRTE
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Template Sequence  SLNGSTGEVILGKQPLSPPALSGDLGT. . . . . . . . . . . . . FMAWVDDVRKLKVLANADTPDDALTARNNGAQGIGLCRTE
Template Known Secondary structure  TTT
BS


B




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SGG
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   500.........510.........520...... ...530.........540.........550.........560......
 
   408.410........ .420.........430.........440.........450......
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Query Sequence  MLYMDRDSAPD. . . . . . . . . . . . . . . . . . . . . EQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKSIPYLNI. . . . . . . . . .
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Template Sequence  HMFFASDERIKAVRQMIMAPTLELRQQALDRLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGNIEDIVSELCAE
Template Known Secondary structure  GGTTT

SSTTTS


S
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S
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   567..570.........580.........590.........600.........610.........620.........630.........640......
 
   457..460.........470.........480.........490. ........500.........510.....
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Query Sequence  . . . . . . . . . . . . . . PQEENPFLGYRAVRIYPEFAGLFRTQLRAILRAAS. . . . . . . FGNAQLMIPMVHSLDQILWVKGEI
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Template Sequence  TGANQEDALARIEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFEAAIAMTNQGVQVFPEIMVPLVGTPQELGHQVTLI
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   647..650.........660.........670.........680.........690.........700.........710.........720......
 
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Query Sequence  QKAIVELKRDGLRHAETITLGIMVEVPSVCYIIDHFCDEVDFFSIGSNDMTQYLYAVDRNN. . . . . . PRVSPLYNPITP.
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Template Sequence  RQVAEKV. FANVGKTIGYKVGTMIEIPRAALVADEIAEQAEFFSFGTNDLTQMTFGYSRDDVGKFIPVYLAQGILQHDPF
Template Known Secondary structure  .TT





STTTT
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T

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   727..730... ......740.........750.........760.........770.........780.........790.........800.....
 
   589590.........600.... .....610.........620.........630.........640.........
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Query Sequence  . . . . . . SFLRMLQQIVTTAHQR. . GKWVGICGELGGESRYLPLLLGLGLDELSMSSPRIPAVKSQLRQL
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Template Sequence  EVLDQRGVGELVKFATERGRKARPNLKVGICGEHGGEPSSVAFFAKAGLDYVSCSPFRVPIARLAAAQV
Template Known Secondary structure  TS

TTTSTT

SGGGG
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   806...810.........820.........830.........840.........850.........860.........870....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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