Job Description P76395 Confidence 2.77% Date Thu Jan 5 12:22:33 GMT 2012 Rank 89 Aligned Residues 122 % Identity 15% Template c3hslX_ PDB info PDB header:replication Chain: X: PDB Molecule:orf59; PDBTitle: the crystal structure of pf-8, the dna polymerase accessory subunit2 from kaposi's sarcoma-associated herpesvirus Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.																170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	M	Q	I	G	D	G	G	V	V	V	D	L	G	H	G	L	Q	L	P	L	T	P	M	A	G	E	Y	A	N	M	T	H	F	I	T	D	E	D	A	V	S	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	F	T	S	T	G	R	A	H	K	V	A	A	F	T	D	G	I	Q
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	S	S	V	G	T	A	G	V	L	G	L	R	I	K	N	A	L	T	P	L	V	G	H	T	E	G	S	G	D	V	S	F	S	F	R	N	T	S	V	G	S	G	F	T	H	T	R	E	L	F	G	A	N	V	L	D	A	G	I	A	F	Y	R	P	Q	F	V	R	T	T	I	S	Y	G	D	N	L	T
Template Known Secondary structure							S	S	S								S	S						T	T		S	S		S	S								S	B		T	T		S		B						T		T	T																					S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		R	L	A	L	N	M	L	D	N	S	P	H	.	V	P	F	F	T	P	F	F	N	G	L	A	A	A	T	Q	E	Q	L	D	L	L	P	E	L	L	K	Q	F	L	S	S	P	A	V	N	E	R	T	D	D	D	K	T	L	A	L	A	L
Query Conservation														.
Alig confidence														.																															.	.	.	.
Template Conservation																																													.	.	.	.
Template Sequence		S	T	V	H	K	S	V	V	D	Q	K	G	I	L	P	F	H	D	R	M	E	A	G	G	R	T	T	R	L	L	L	C	G	K	T	G	A	F	L	L	K	W	L	.	.	.	.	R	Q	Q	K	T	K	E	D	Q	T	V	T	V	S	V
Template Known Secondary structure												T	T	S				S	S				S																						.	.	.	.		T	T			S	S
Template Predicted Secondary structure																																													.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions