Job Description P76395 Confidence 99.96% Date Thu Jan 5 12:22:33 GMT 2012 Rank 14 Aligned Residues 217 % Identity 15% Template c2pnqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:[pyruvate dehydrogenase [lipoamide]]-phosphatase PDBTitle: crystal structure of pyruvate dehydrogenase phosphatase 12 (pdp1) Resolution 1.81 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	L	P	C	Q	D	A	C	Q	M	Q	I	A	W	L	N	D	Q	Q	P	L	L	S	V	F	V	A	D	G	A	G	S	V	S	Q	G	G	E	G	A	M	L	A	V	N	E	A	M	A	Y	M	S	Q	K	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.
Template Sequence		A	N	A	P	I	E	D	R	R	S	A	T	T	C	.	.	.	L	Q	T	R	G	M	L	L	G	V	F	D	G	H	A	G	C	A	C	S	Q	A	V	S	E	R	L	F	Y	Y	I	A	V	S	L	L	P	H	E	T	L	L	E	I	E	N	A	V	E	L	L	P	I	L	Q	W	H	K	H	P	N	D	Y
Template Known Secondary structure			S	S	S											.	.	.	S	S	S	S											S	S	S																													T	T	T												T	T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.				.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
																						75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110										.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	E	L	G	L	N	D	V	L	A	T	N	M	V	L	T	I	R	Q	R	L	F	A	E	A	E	A	K	E	L	A	V	R	D	F	.	.	.	.	.	.	.	.	.	A	C	T	F	L	G	L	I	S	S	P	D	G	T	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	S	K	E	A	S	K	L	Y	F	N	G	L	R	T	Y	W	Q	E	L	I	D	L	D	I	D	V	K	E	A	L	I	N	A	F	K	R	L	D	N	D	I	S	L	E	A	Q	V	G	D	P	N	S	F	L	N	Y	L	V	L	R	V	A	F	S	G	A	T	A	C	V	A	H	V	D	G	V	D	L	H
Template Known Secondary structure				S	T	T																																														S	S													S											T	T
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.						.	.	.	.	.	.	.	.	150	.	.	.	.	.	.																													.	.	.	160	.	.
Predicted Secondary structure																		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query Sequence		I	M	Q	I	G	D	G	G	V	V	V	D	L	G	H	G	.	.	.	.	.	L	Q	L	P	L	T	P	M	A	G	E	Y	A	N	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	H	F	I	T	D	.	.	.	.	.	.	.	.	.	.
Query Conservation																		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	N	T	G	D	S	R	A	M	L	G	V	Q	E	E	D	G	S	W	S	A	V	T	L	S	N	D	H	N	A	Q	N	E	R	E	L	Q	R	L	K	L	E	H	P	K	N	E	A	K	S	V	V	K	Q	D	R	L	L	G	L	L	M	P	F	R	A	F	G	D	V	K	F	K	W	S	I	D	L	Q
Template Known Secondary structure						S	S										T	T	S												S	T	T											T	S		G	G	G					B	S	S	S	S	B	T	T	T	B	S	S	S	B					G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
																				163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	A	V	S	R	L	E	T	F	T	S	T	G	R	A	H	K	V	A	A	F	T	D	G	I	Q	R	L	A	L	N	M	L	D	N	S	P	H	V	P	F	F	T	P	F	F	N	G	L	A	A	A	T	Q	E	Q	L	D	L	L	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.
Template Sequence		K	R	V	I	E	S	G	P	D	P	P	N	Y	H	T	P	P	Y	L	T	A	E	P	E	V	T	Y	H	R	L	R	P	Q	D	K	F	L	V	L	A	T	D	G	L	W	E	T	M	H	R	Q	D	.	.	.	.	.	.	.	V	V	R	I	V	G	E	Y	L	T	G	M	H	H	Q	Q	Q	N	A	A	T
Template Known Secondary structure						S	S	S				T	T		S	S	S				B												T	T													T	T	S					.	.	.	.	.	.	.										T	T		S	S
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.								.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	L	K	Q	F	L	S	S	P	A	V	N	E	R	T	D	D	D	K	T	L	A	L	A	L	W
Query Conservation
Alig confidence									.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.
Template Sequence		H	L	I	R	H	A	V	.	.	.	.	.	.	.	G	Y	R	D	D	I	T	I	I	V	V	Q	F
Template Known Secondary structure									.	.	.	.	.	.	.				S
Template Predicted Secondary structure									.	.	.	.	.	.	.
Template SS confidence
		410	.	.	.	.	.	.								.	.	.	420	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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