Job Description P60595 Confidence 99.97% Date Thu Jan 5 12:06:56 GMT 2012 Rank 27 Aligned Residues 188 % Identity 18% Template c3fijD_ PDB info PDB header:structural genomics, unknown function Chain: D: PDB Molecule:lin1909 protein; PDBTitle: crystal structure of a uncharacterized protein lin1909 Resolution 2.30 Å

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		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.							.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.																.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure				.																															.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.																															.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	N	.	V	V	I	L	D	T	G	C	A	N	L	N	S	V	K	S	A	I	A	R	H	G	Y	E	P	K	V	S	R	D	.	.	.	.	.	.	P	D	V	V	L	L	A	D	K	L	F	L	P	G	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	Q	A	A	M	D	Q	V	R
Query Conservation				.																															.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.								.	.	.	.																				.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		L	K	P	V	I	G	I	T	G	Q	.	.	.	.	Q	R	Y	V	D	A	I	Q	K	V	G	G	F	P	I	A	L	P	I	D	D	P	S	T	A	V	Q	A	I	S	L	V	D	G	L	L	L	T	G	G	Q	D	I	T	P	Q	L	Y	L	E	E	P	S	Q	E	I	G	A	Y	F	P	P	R	D	S	Y
Template Known Secondary structure												.	.	.	.										T	T											G	G	G							T		S								S				G	G	G	G	T					T	T
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.					.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	E	L	F	D	L	I	K	A	C	T	Q	P	V	L	G	I	C	L	G	M	Q	L	L	G	R	R	S	E	E	S	N	G	V	D	L	L	G	I	I	D	E	D	V	P	K	M	T	D	F	G	L	P	L	P	H	M	G	W	N	R	V	Y	P	Q	A	G	N	R	L	F	Q	G	I	E	D	G	A	Y
Query Conservation
Alig confidence																																																												.	.	.
Template Conservation																																																												.	.	.
Template Sequence		E	I	A	L	V	R	A	A	L	D	A	G	K	P	I	F	A	I	C	R	G	X	Q	L	V	N	V	A	L	G	G	T	L	Y	Q	D	I	S	Q	V	E	T	K	A	L	Q	H	L	Q	R	V	D	E	Q	L	G	S	H	.	.	.	T	I	D	I	E	P	T	S	E	L	A	K	H	H	P	N	K	K	L
Template Known Secondary structure													T							T										T	T					S	S	G	G	G	S	S	S						B			S		T	T	S				.	.	.						T	T	S	T	G	G	G	T	S		T	T
Template Predicted Secondary structure																																																												.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		139	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure										.	.	.																										.	.										.	.	.
Query SS confidence										.	.	.																										.	.										.	.	.
Query Sequence		F	Y	F	V	H	S	Y	A	.	.	.	M	P	V	N	P	W	T	I	A	Q	C	N	Y	G	E	P	F	T	A	A	V	Q	K	D	N	.	.	F	Y	G	V	Q	F	H	P	E	.	.	.	R	S	G	A	A	G	A	K	L	L	K	N	F	L	E
Query Conservation										.	.	.																										.	.										.	.	.
Alig confidence										.	.	.																										.	.										.	.	.
Template Conservation
Template Sequence		V	N	S	L	H	H	Q	F	I	K	K	L	A	P	S	F	K	V	T	A	R	T	A	D	G	X	I	E	A	V	E	G	D	N	L	P	S	W	Y	L	G	V	Q	W	H	P	E	L	X	F	Q	T	D	P	E	S	E	Q	L	F	Q	A	L	V	D
Template Known Secondary structure					B		S					S			T	T								T	T									S	S		S	S						S	S		G	G	G	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions