Job Description P60595 Confidence 52.38% Date Thu Jan 5 12:06:56 GMT 2012 Rank 339 Aligned Residues 67 % Identity 16% Template c2zkqb_ PDB info PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.									30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.
Query Sequence		N	V	V	I	L	D	T	G	C	A	N	L	N	S	V	K	S	A	I	A	R	H	G	Y	E	P	K	V	.	.	.	.	.	.	.	.	S	R	D	P	D	V	V	L	L	A	D	K	L	F	L	P	G	V	G	T	A	Q	A	A	M	D	Q	V	R	E	R	E	L	F	D	L	I	K	A	C	T	Q	P	V
Query Conservation																														.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.
Template Sequence		D	V	S	V	I	S	S	R	N	T	G	Q	R	A	V	L	K	F	A	A	A	T	G	A	T	P	I	A	G	R	F	T	P	G	F	T	N	Q	I	Q	A	A	F	R	E	P	R	L	L	V	V	T	D	P	R	A	.	.	.	.	.	.	.	.	.	D	H	Q	P	L	T	E	A	S	Y	V	N	L	P	T
Template Known Secondary structure		G							S																					S	S								T	T		S	S					S					S		T	T	T	.	.	.	.	.	.	.	.	.	T											T
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.										.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		74	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	I	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	L	C
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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