Job Description P60595 Confidence 99.94% Date Thu Jan 5 12:06:56 GMT 2012 Rank 38 Aligned Residues 189 % Identity 20% Template c2w7tA_ PDB info PDB header:ligase Chain: A: PDB Molecule:putative cytidine triphosphate synthase; PDBTitle: trypanosoma brucei ctps - glutaminase domain with bound2 acivicin Resolution 2.10 Å

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		1	.	.	.	.	.						.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.							.	.	.	.	.	30	.	.	.	.												.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.																			.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.												.
Query SS confidence								.	.	.	.	.																			.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.												.
Query Sequence		M	N	V	V	I	L	.	.	.	.	.	D	T	G	C	A	N	L	N	S	V	K	S	A	I	A	R	H	G	.	.	.	.	.	.	Y	E	P	K	V	S	R	D	P	D	.	.	.	.	.	.	.	.	.	.	.	V	V	L	L	A	D	K	L	F	L	P	.	G	V	G	T	A	Q	A	A	M	D	Q	V
Query Conservation								.	.	.	.	.																			.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.												.
Alig confidence								.	.	.	.	.								.											.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.												.												.
Template Conservation																				.																																																													.
Template Sequence		V	R	I	A	F	V	G	K	Y	L	Q	D	A	G	D	T	Y	F	.	S	V	L	Q	C	F	E	H	C	Q	I	A	L	Q	V	R	L	D	I	L	Y	V	D	S	E	E	L	E	G	P	N	A	D	E	A	R	K	A	L	L	G	C	D	G	I	F	V	P	G	G	F	G	N	R	G	V	D	G	K	C	.
Template Known Secondary structure															T	T	T	T		.														T										G	G	G	G	S	S	T	T	T									T		S									T	T	T	T						.
Template Predicted Secondary structure																				.																																																													.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.												.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	R	E	L	F	D	L	I	K	A	C	T	Q	P	V	L	G	I	C	L	G	M	Q	L	L	G	R	R	S	E	.	.	.	.	.	.	.	.	.	.	.	E	S	N	G	V	D	L	L	G	I	I	D	E	D	V	P	K	M	T	D	F	G	L	P	L	P	H	M	G	W	N	R	V	Y	P	Q	A	G
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																		.											.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																		.
Template Sequence		.	.	.	A	A	A	Q	V	A	R	M	N	N	I	P	Y	F	G	V	L	.	G	M	Q	V	A	V	I	E	L	S	R	N	V	V	G	W	S	D	A	N	S	E	E	F	N	K	E	S	T	H	Q	V	V	R	I	M	D	C	D	R	N	K	M	G	A	N	M	H	L	G	A	C	D	V	Y	I	V	E	K
Template Known Secondary structure		.	.	.										T								.													T	T			T	T				T	T	T		T	T		S								G	G	G	B		S	S		B														T
Template Predicted Secondary structure		.	.	.																		.
Template SS confidence
					403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
		127	.	.	130	.	.	.				.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150													.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																					.	.				.															.
Query SS confidence									.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																					.	.				.															.
Query Sequence		N	R	L	F	Q	G	I	.	.	.	E	D	G	A	Y	F	Y	F	V	H	S	Y	A	M	P	V	N	.	.	.	.	.	.	.	.	.	.	.	.	P	W	T	I	A	Q	C	N	Y	G	E	P	F	T	A	A	V	Q	K	D	.	.	N	F	Y	.	G	V	Q	F	H	P	E	R	S	G	A	A	G	A	.
Query Conservation									.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																					.	.				.															.
Alig confidence									.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																					.	.				.															.
Template Conservation
Template Sequence		S	S	I	M	A	K	I	Y	S	K	S	N	I	V	V	E	R	H	R	H	R	Y	E	V	N	T	A	Y	F	E	D	L	R	K	A	G	L	C	I	S	A	V	T	D	P	T	F	S	S	R	C	R	V	E	A	V	E	N	P	S	L	R	F	F	L	A	V	Q	F	H	P	E	F	I	S	T	P	M	D	P
Template Known Secondary structure		T	S						T	T	T		S														G	G	G							T	T							S		T	T			T	T									T	T	S	S	S					S	S		G	G	G	S		B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
			188	.	190	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	K	L	L	K	N	F	L	E
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		A	P	T	Y	L	S	F	M	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		560	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions