Job Description P60595 Confidence 99.92% Date Thu Jan 5 12:06:56 GMT 2012 Rank 40 Aligned Residues 190 % Identity 17% Template c2v4uA_ PDB info PDB header:ligase Chain: A: PDB Molecule:ctp synthase 2; PDBTitle: human ctp synthetase 2 - glutaminase domain in complex with2 5-oxo-l-norleucine Resolution 2.3 Å

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		1	.	.	.	.	.											.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.																					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	N	V	V	I	L	.	.	.	.	.	.	.	.	.	.	D	T	G	C	A	N	L	N	S	V	K	S	A	I	A	R	H	G	Y	E	P	K	V	S	R	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	V	L	L	A	D	K	L	F	L	P	G	V	G	T	A
Query Conservation								.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	K	I	C	S	I	A	L	V	G	K	Y	T	K	L	R	D	C	Y	A	S	V	F	K	A	L	E	H	S	A	L	A	I	N	H	K	L	N	L	M	Y	I	D	S	I	D	L	E	K	I	T	E	T	E	D	P	V	K	F	H	E	A	W	Q	K	L	C	K	A	D	G	I	L	V	P	G	G	F	G	I
Template Known Secondary structure												S		S	S			G	G	G														T	T										G	G	G	G	S																						S						S			S	S
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.													.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	A	M	D	Q	V	R	E	R	E	L	F	D	L	I	K	A	C	T	Q	P	V	L	G	I	C	L	G	M	Q	L	L	G	R	R	S	E	E	S	N	.	.	.	.	.	.	.	.	.	.	.	.	G	V	D	L	L	G	I	I	D	E	D	V	P	K	M	T	D	F	G	L	P	L	P	H	M	G	W
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.																		.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.																		.
Template Sequence		R	G	T	L	G	K	L	.	.	.	Q	A	I	S	W	A	R	T	K	K	I	P	F	L	G	V	L	.	G	M	Q	L	A	V	I	E	F	A	R	N	C	L	N	L	K	D	A	D	S	T	E	F	R	P	N	A	P	V	P	L	V	I	D	M	P	E	H	N	P	G	N	L	G	G	T	M	R	L	G	I
Template Known Secondary structure		T	T						.	.	.									T	T								.														S			T	T				S	T	T		T	T		S									B			T	T		S	S		B
Template Predicted Secondary structure									.	.	.																		.
Template SS confidence
		376	.	.	.	380	.	.				.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.										.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.		.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																				.	.	.												.	.	.	.	.	.	.	.	.																								.	.				.
Query SS confidence																				.	.	.												.	.	.	.	.	.	.	.	.																								.	.				.
Query Sequence		N	R	V	Y	P	Q	A	G	N	R	L	F	Q	G	I	E	D	G	.	.	.	A	Y	F	Y	F	V	H	S	Y	A	M	.	.	.	.	.	.	.	.	.	P	V	N	P	W	T	I	A	Q	C	N	Y	G	E	P	F	T	A	A	V	Q	K	D	.	.	N	F	Y	.	G	V	Q	F	H	P	E	R	S	G
Query Conservation																				.	.	.												.	.	.	.	.	.	.	.	.																								.	.				.
Alig confidence																				.	.	.												.	.	.	.	.	.	.	.	.															.									.	.				.
Template Conservation																																																									.
Template Sequence		R	R	T	V	F	K	T	E	N	S	I	L	R	K	L	Y	G	D	V	P	F	I	E	E	R	H	R	H	R	F	E	V	N	P	N	L	I	K	Q	F	E	Q	N	D	L	S	F	V	G	Q	D	V	D	G	D	.	R	M	E	I	I	E	L	A	N	H	P	Y	F	V	G	V	Q	F	H	P	E	F	S	S
Template Known Secondary structure							S		S								T	T	S		S														G	G	G	S	G	G	G	T	T	S	S								T	T	S		.	S							S	S	S	S						S	S	B	G	G	G	G
Template Predicted Secondary structure																																																									.
Template SS confidence
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.		.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
		184	.	.	.	.			.	190	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		A	A	G	A	K	.	.	L	L	K	N	F	L	E
Query Conservation							.	.
Alig confidence							.	.
Template Conservation
Template Sequence		R	P	M	K	P	S	P	P	Y	L	G	L	L	L
Template Known Secondary structure		B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions