Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	G	D	N	T	L	I	H	S	H	G	I	N	R	R	D	F	M	K	L	C	A	A	L	A	A	T	M	G	L	S	S	K	A	A	A	E	M	A	E	S	V	T	N	P	Q	R	P	P	V	I	W	I	G	A	Q	E	C	T
Secondary structure
SS confidence
Disorder		?	?	?										?	?															?	?	?	?	?	?	?									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	C	T	E	S	L	L	R	A	T	H	P	T	V	E	N	L	V	L	E	T	I	S	L	E	Y	H	E	V	L	S	A	A	F	G	H	Q	V	E	E	N	K	H	N	A	L	E	K	Y	K	G	Q	Y	V	L	V	V	D	G	S
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	P	L	K	D	N	G	I	Y	C	M	V	A	G	E	P	I	V	D	H	I	R	K	A	A	E	G	A	A	A	I	I	A	I	G	S	C	S	A	W	G	G	V	A	A	A	G	V	N	P	T	G	A	V	S	L	Q	E	V	L
Secondary structure
SS confidence
Disorder																																																	?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	G	K	T	V	I	N	I	P	G	C	P	P	N	P	H	N	F	L	A	T	V	A	H	I	I	T	Y	G	K	P	P	K	L	D	D	K	N	R	P	T	F	A	Y	G	R	L	I	H	E	H	C	E	R	R	P	H	F	D	A
Secondary structure
SS confidence
Disorder		?	?	?																																																								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		G	R	F	A	K	E	F	G	D	E	G	H	R	E	G	W	C	L	Y	H	L	G	C	K	G	P	E	T	Y	G	N	C	S	T	L	Q	F	C	D	V	G	G	V	W	P	V	A	I	G	H	P	C	Y	G	C	N	E	E	G	I
Secondary structure
SS confidence
Disorder																																							?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		G	F	H	K	G	I	H	Q	L	A	N	V	E	N	Q	T	P	R	S	Q	K	P	D	V	N	A	K	E	G	G	N	V	S	A	G	A	I	G	L	L	G	G	V	V	G	L	V	A	G	V	S	V	M	A	V	R	E	L	G	R
Secondary structure
SS confidence
Disorder									?			?	?	?	?	?	?		?				?	?	?		?	?	?	?	?	?	?	?	?																	?						?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.
Sequence		Q	Q	K	K	D	N	A	D	S	R	G	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3rgw chain S Region: 47 - 323 Aligned: 270 Modelled: 277 Confidence: 100.0% Identity: 41% PDB header:oxidoreductase/oxidoreductase Chain: S: PDB Molecule:membrane-bound hydrogenase (nife) small subunit hoxk; PDBTitle: crystal structure at 1.5 a resolution of an h2-reduced, o2-tolerant2 hydrogenase from ralstonia eutropha unmasks a novel iron-sulfur3 cluster Phyre2 PDB 3myr chain E Region: 46 - 315 Aligned: 267 Modelled: 270 Confidence: 100.0% Identity: 48% PDB header:oxidoreductase Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state Phyre2 PDB 1wui chain S domain 1 Region: 43 - 315 Aligned: 265 Modelled: 273 Confidence: 100.0% Identity: 45% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 1h2a chain S Region: 43 - 315 Aligned: 265 Modelled: 273 Confidence: 100.0% Identity: 45% PDB header:oxidoreductase Chain: S: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris Phyre2 PDB 1frf chain S Region: 46 - 315 Aligned: 260 Modelled: 270 Confidence: 100.0% Identity: 47% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 1e3d chain A Region: 47 - 315 Aligned: 260 Modelled: 269 Confidence: 100.0% Identity: 42% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 1yq9 chain A domain 1 Region: 46 - 314 Aligned: 258 Modelled: 269 Confidence: 100.0% Identity: 45% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 1cc1 chain S Region: 47 - 315 Aligned: 257 Modelled: 269 Confidence: 100.0% Identity: 37% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 2wpn chain A Region: 48 - 314 Aligned: 256 Modelled: 267 Confidence: 100.0% Identity: 39% PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit; PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough Phyre2 PDB 2fug chain 6 domain 1 Region: 101 - 207 Aligned: 93 Modelled: 107 Confidence: 99.6% Identity: 22% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nq06-like Phyre2 PDB 2g4r chain B Region: 68 - 208 Aligned: 124 Modelled: 129 Confidence: 90.5% Identity: 15% PDB header:biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein; PDBTitle: anomalous substructure of moga Phyre2 PDB 2e76 chain D Region: 13 - 50 Aligned: 38 Modelled: 38 Confidence: 85.5% Identity: 18% PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus Phyre2 PDB 2nqr chain A domain 3 Region: 68 - 207 Aligned: 113 Modelled: 140 Confidence: 84.5% Identity: 14% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MoeA central domain-like Phyre2 PDB 2is8 chain A Region: 68 - 208 Aligned: 127 Modelled: 129 Confidence: 84.2% Identity: 13% PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 Phyre2 PDB 1y5e chain A domain 1 Region: 47 - 207 Aligned: 144 Modelled: 149 Confidence: 83.8% Identity: 9% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MogA-like Phyre2 PDB 2pq4 chain B Region: 13 - 32 Aligned: 20 Modelled: 20 Confidence: 82.8% Identity: 60% PDB header:chaperone/oxidoreductase Chain: B: PDB Molecule:periplasmic nitrate reductase precursor; PDBTitle: nmr solution structure of napd in complex with napa1-352 signal peptide Phyre2 PDB 2fyn chain O Region: 14 - 39 Aligned: 26 Modelled: 26 Confidence: 82.3% Identity: 23% PDB header:oxidoreductase Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex Phyre2 PDB 1xi8 chain A domain 3 Region: 64 - 207 Aligned: 97 Modelled: 109 Confidence: 81.1% Identity: 13% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MoeA central domain-like Phyre2 PDB 2fts chain A domain 3 Region: 68 - 207 Aligned: 117 Modelled: 128 Confidence: 80.1% Identity: 14% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MoeA central domain-like Phyre2 PDB 2pjk chain A Region: 68 - 207 Aligned: 126 Modelled: 128 Confidence: 77.6% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii Phyre2 1 c3rgwS_ 2 c3myrE_ 3 d1wuis1 4 c1h2aS_ 5 d1frfs_ 6 d1e3da_ 7 d1yq9a1 8 d1cc1s_ 9 c2wpnA_ 10 d2fug61 11 c2g4rB_ 12 c2e76D_ 13 d2nqra3 14 c2is8A_ 15 d1y5ea1 16 c2pq4B_ 17 c2fynO_ 18 d1xi8a3 19 d2ftsa3 20 c2pjkA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3rgwS_ 100.0 41 PDB header:oxidoreductase/oxidoreductase Chain: S: PDB Molecule:membrane-bound hydrogenase (nife) small subunit hoxk; PDBTitle: crystal structure at 1.5 a resolution of an h2-reduced, o2-tolerant2 hydrogenase from ralstonia eutropha unmasks a novel iron-sulfur3 cluster 2 c3myrE_ 100.0 48 PDB header:oxidoreductase Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state 3 d1wuis1 100.0 45 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 4 c1h2aS_ 100.0 45 PDB header:oxidoreductase Chain: S: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris 5 d1frfs_ 100.0 47 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 6 d1e3da_ 100.0 42 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 7 d1yq9a1 100.0 45 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 8 d1cc1s_ 100.0 37 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 9 c2wpnA_ 100.0 39 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit; PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough 10 d2fug61 99.6 22 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nq06-like 11 c2g4rB_ 90.5 15 PDB header:biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein; PDBTitle: anomalous substructure of moga 12 c2e76D_ 85.5 18 PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 13 d2nqra3 84.5 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 14 c2is8A_ 84.2 13 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 15 d1y5ea1 83.8 9 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 16 c2pq4B_ 82.8 60 PDB header:chaperone/oxidoreductase Chain: B: PDB Molecule:periplasmic nitrate reductase precursor; PDBTitle: nmr solution structure of napd in complex with napa1-352 signal peptide 17 c2fynO_ 82.3 23 PDB header:oxidoreductase Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 18 d1xi8a3 81.1 13 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 19 d2ftsa3 80.1 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 20 c2pjkA_ 77.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 21 c1p84E_ not modelled 76.7 3 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 22 d1jlja_ not modelled 73.0 11 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 23 c2fu3A_ not modelled 72.2 14 PDB header:biosynthetic protein/structural protein Chain: A: PDB Molecule:gephyrin; PDBTitle: crystal structure of gephyrin e-domain 24 c2nqqA_ not modelled 71.2 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q 25 d1ovma1 not modelled 70.6 18 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 26 d1uuya_ not modelled 65.5 11 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 27 d1uz5a3 not modelled 64.2 21 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 28 c2fyuE_ not modelled 62.4 14 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit, PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor 29 d1mkza_ not modelled 60.1 9 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 30 c3rfqC_ not modelled 58.9 14 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum 31 d2h1qa1 not modelled 57.5 14 Fold:PLP-dependent transferase-like Superfamily:Dhaf3308-like Family:Dhaf3308-like 32 c2wcvI_ not modelled 57.2 24 PDB header:isomerase Chain: I: PDB Molecule:l-fucose mutarotase; PDBTitle: crystal structure of bacterial fucu 33 d1pvda1 not modelled 54.1 16 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 34 d2g2ca1 not modelled 52.8 11 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 35 d1ik6a2 not modelled 51.4 16 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 36 d2djia1 not modelled 50.1 16 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 37 c3ilhA_ not modelled 50.1 17 PDB header:transcription regulator Chain: A: PDB Molecule:two component response regulator; PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii 38 d1zpda1 not modelled 49.5 20 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 39 d1ogda_ not modelled 49.3 16 Fold:RbsD-like Superfamily:RbsD-like Family:RbsD-like 40 c3e7nB_ not modelled 48.6 28 PDB header:transport protein Chain: B: PDB Molecule:d-ribose high-affinity transport system; PDBTitle: crystal structure of d-ribose high-affinity transport system from2 salmonella typhimurium lt2 41 d2f7wa1 not modelled 46.5 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 42 d1wu2a3 not modelled 41.6 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 43 d2ob5a1 not modelled 40.7 20 Fold:RbsD-like Superfamily:RbsD-like Family:RbsD-like 44 c3mvkA_ not modelled 40.1 20 PDB header:isomerase Chain: A: PDB Molecule:protein fucu; PDBTitle: the crystal structure of fucu from bifidobacterium longum to 1.65a 45 d1ozha1 not modelled 36.6 18 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 46 c1ovmC_ not modelled 36.4 18 PDB header:lyase Chain: C: PDB Molecule:indole-3-pyruvate decarboxylase; PDBTitle: crystal structure of indolepyruvate decarboxylase from2 enterobacter cloacae 47 c2wcuB_ not modelled 36.1 24 PDB header:isomerase Chain: B: PDB Molecule:protein fucu homolog; PDBTitle: crystal structure of mammalian fucu 48 d1t9ba1 not modelled 34.1 25 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 49 d2r25b1 not modelled 34.0 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 50 d1qopa_ not modelled 33.6 16 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 51 c3a52A_ not modelled 30.9 29 PDB header:hydrolase Chain: A: PDB Molecule:cold-active alkaline phosphatase; PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp. 52 c1uz5A_ not modelled 26.8 19 PDB header:molybdopterin biosynthesis Chain: A: PDB Molecule:402aa long hypothetical molybdopterin PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii 53 d1y6va1 not modelled 26.6 21 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 54 d1k7ha_ not modelled 25.3 17 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 55 c2x98A_ not modelled 25.0 21 PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: h.salinarum alkaline phosphatase 56 d1xhja_ not modelled 24.4 19 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 57 c3e2dB_ not modelled 23.7 17 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase 58 d2g39a1 not modelled 23.5 15 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 59 c3uhjE_ not modelled 22.2 17 PDB header:oxidoreductase Chain: E: PDB Molecule:probable glycerol dehydrogenase; PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021 60 c2jnvA_ not modelled 21.6 24 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa 61 c1ew2A_ not modelled 19.9 21 PDB header:hydrolase Chain: A: PDB Molecule:phosphatase; PDBTitle: crystal structure of a human phosphatase 62 d1zeda1 not modelled 19.9 21 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 63 c2iucB_ not modelled 19.7 8 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: structure of alkaline phosphatase from the antarctic2 bacterium tab5 64 c2kveA_ not modelled 19.6 56 PDB header:hormone Chain: A: PDB Molecule:mesencephalic astrocyte-derived neurotrophic factor; PDBTitle: c-terminal domain of mesencephalic astrocyte-derived neurotrophic2 factor (manf) 65 c2zwmA_ not modelled 19.4 25 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis 66 c2oasA_ not modelled 18.6 26 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coenzyme a transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa)2 in complex with coa from shewanella oneidensis, northeast structural3 genomics target sor119. 67 c3nhzA_ not modelled 17.3 16 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 68 d2g2xa1 not modelled 16.9 15 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 69 c3iv7B_ not modelled 16.6 13 PDB header:oxidoreductase Chain: B: PDB Molecule:alcohol dehydrogenase iv; PDBTitle: crystal structure of iron-containing alcohol dehydrogenase2 (np_602249.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.07 a resolution 70 d2ez9a1 not modelled 15.6 14 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 71 c2r8bA_ not modelled 15.1 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2452; PDBTitle: the crystal structure of the protein atu2452 of unknown function from2 agrobacterium tumefaciens str. c58 72 d1kgsa2 not modelled 14.5 20 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 73 d1ys7a2 not modelled 14.4 21 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 74 d1xhfa1 not modelled 14.2 21 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 75 d1ofcx1 not modelled 14.0 31 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 76 c3fq6A_ not modelled 12.7 25 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: the crystal structure of a methyltransferase domain from bacteroides2 thetaiotaomicron vpi 77 c3eh7A_ not modelled 12.4 28 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: the structure of a putative 4-hydroxybutyrate coa-transferase from2 porphyromonas gingivalis w83 78 c2zayA_ not modelled 12.4 13 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans 79 c2ju5A_ not modelled 11.7 22 PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin disulfide isomerase; PDBTitle: dsbh oxidoreductase 80 d1zh2a1 not modelled 11.6 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 81 d1peya_ not modelled 11.5 23 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 82 c2w0yB_ not modelled 11.1 12 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: h.salinarum alkaline phosphatase 83 c2nvvF_ not modelled 11.0 18 PDB header:hydrolase Chain: F: PDB Molecule:acetyl-coa hydrolase/transferase family protein; PDBTitle: crystal structure of the putative acetyl-coa hydrolase/transferase2 pg1013 from porphyromonas gingivalis, northeast structural genomics3 target pgr16. 84 d1evsa_ not modelled 10.9 33 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Long-chain cytokines 85 c2qvgA_ not modelled 10.7 15 PDB header:transferase Chain: A: PDB Molecule:two component response regulator; PDBTitle: the crystal structure of a two-component response regulator2 from legionella pneumophila 86 c2j48A_ not modelled 10.5 18 PDB header:transferase Chain: A: PDB Molecule:two-component sensor kinase; PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein. 87 c2z1dA_ not modelled 10.1 27 PDB header:metal binding protein Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd; PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis 88 d1z6na1 not modelled 10.0 20 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Thioltransferase 89 c3d3uA_ not modelled 9.9 30 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26 90 d1c4ea_ not modelled 9.8 34 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Gurmarin-like Family:Gurmarin, a sweet taste-suppressing polypeptide 91 c3gk7A_ not modelled 9.8 23 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum 92 d2a9pa1 not modelled 9.7 19 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 93 d1uhua_ not modelled 9.6 16 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:MMLV matrix protein-like 94 d1omba_ not modelled 9.6 43 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 95 d2f6ma1 not modelled 9.5 21 Fold:Long alpha-hairpin Superfamily:Endosomal sorting complex assembly domain Family:VPS23 C-terminal domain 96 d2ar1a1 not modelled 9.4 12 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 97 d1xwdb1 not modelled 9.0 25 Fold:Cystine-knot cytokines Superfamily:Cystine-knot cytokines Family:Gonadodropin/Follitropin 98 c2omkB_ not modelled 9.0 19 PDB header:transferase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: structure of the bacteroides thetaiotaomicron thiamin2 pyrophosphokinase 99 c3jteA_ not modelled 9.0 20 PDB header:protein binding Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0