 |
Job Description | P52645 | Confidence | 6.19% | Date | Thu Jan 5 12:05:58 GMT 2012 |
Rank | 22 | Aligned Residues | 69 |
% Identity | 14% | Template | c1v9lA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:glutamate dehydrogenase; |
PDBTitle: l-glutamate dehydrogenase from pyrobaculum islandicum2 complexed with nad
|
Resolution | 2.80 Å |
|
 |
  |   |
743 | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | |
|
|
|
|
|
. | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . | . | . | 790 | . | . | . | . | . | . | . | . | . | 800 | . | . | . | . | . | . | . | . | . | 810 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|  |  |  |
|
| . | . | . | . | . | . |
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | L | P | L | W | L | N | N | E | K | W | I | V | K | D | G | W | L | A | N | S | . |
. |
. |
. |
. |
. |
G | P | M | T | L | R | L | D | K | D | T | A | D | A | V | V | K | D | N | M | T | A | G | S | A | I | N | W | L | R | Y | M | E | I | S | R | S | S | T | K | I | N | L | D | N | L | G | L |
Query Conservation |   |
  |
|
|   |   |
|   |   |   |   |   |   |
|   |   |
|   |
|   |   |   | . | . | . | . | . | . |   |   |
|   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|   |
|   |   |   |   |   |   |
|   |
|
|   |
|   |   |   |   |
|
|
|
|
|
|
|
|   |   |
|   |   |   |   |   |
|
|   |   |
|
|   |   |
|
|   |
|   |
|
|   |   |
|
|   |
|
|
|
|
|
|
|   |   |
|
|   |   |   |
Template Sequence |   |
N | I | P | V | R | L | D | G | G | G | F | E | V | F | E | G | Y | R | V | Q | H | C | D | V | L | G | P | Y | K | G | G | V | R | F | H | P | E | V | T | L | A | D | D | V | A | L | A | I | L | M | T | L | K | N | S | L | A | G | L | P | Y | G | G | A | K | G | A | V | R | V | D | P | K | K | L |
Template Known Secondary structure |   |
 |  |  |  |  |
| S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |
| S | S | S | S |  |  |  |  |  |  |
|
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |
|
|  |  |  |  |  |  |
| S |
| G | G | G | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
41 | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|