Job Description P0ADA1 Confidence 99.94% Date Thu Jan 5 11:20:25 GMT 2012 Rank 16 Aligned Residues 173 % Identity 21% Template c3dc7B_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative uncharacterized protein lp_3323; PDBTitle: crystal structure of the protein q88sr8 from lactobacillus plantarum.2 northeast structural genomics consortium target lpr109. Resolution 2.12 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																																					.	.																											.
Query SS confidence																																																					.	.																											.
Query Sequence		D	T	L	L	I	L	G	D	S	L	S	A	G	Y	R	M	S	A	S	A	A	W	P	A	L	L	N	D	K	W	Q	S	K	T	S	V	V	N	A	S	I	S	G	D	T	S	Q	Q	G	L	A	.	.	R	L	P	A	L	L	K	Q	H	Q	P	R	W	V	L	V	E	L	G	G	N	D	G	L	R	G	.
Query Conservation																																																					.	.																											.
Alig confidence																					.												.																				.	.																											.
Template Conservation																					.												.
Template Sequence		K	R	P	A	W	L	G	D	S	I	T	A	N	N	G	L	A	T	V	.	H	Y	H	D	I	L	A	A	D	W	D	.	V	E	R	S	D	N	L	G	I	S	G	S	T	I	G	S	R	Y	D	A	X	A	V	R	Y	Q	A	I	P	E	D	A	D	F	I	A	V	F	G	G	V	N	D	Y	G	R	D	Q
Template Known Secondary structure		S	S						S	T	T	T	S	T	T	S	S		S	S	.											T	.		S								T	T			S	S	T	T	S	S						G	G	G	S		T	T		S													T	T
Template Predicted Secondary structure																					.												.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
									105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.														.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	F	Q	P	Q	Q	T	E	Q	T	L	R	Q	I	L	Q	D	V	K	A	A	N	A	E	P	L	L	M	Q	I	R	L	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Y	G	R	R	Y	N	E	A	F	S	A	I	Y	P	K	L	A	K	E	F	D	V	P	L	L	P
Query Conservation		.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	G	Q	Y	G	D	C	D	X	T	T	F	Y	G	A	L	X	X	L	L	T	G	L	Q	T	N	W	P	T	V	P	K	L	F	I	S	A	I	H	I	G	S	D	F	G	G	S	F	S	A	V	T	N	G	L	G	Y	R	Q	S	D	Y	E	A	A	I	A	Q	X	T	A	D	Y	G	V	P	H	L	S
Template Known Secondary structure						T	T			S	T	T	S																S	T	T	S									B			S	S	S	B	T	T	B		S	S			T	T	S																	T	T
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		165	.	.	.						.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure						.	.	.	.	.
Query SS confidence						.	.	.	.	.
Query Sequence		F	F	M	E	.	.	.	.	.	E	V	Y	L	K	P	Q	W	M	Q	D	D	G	I	H	P	N	R	D	A	Q	P	F	I	A	D	W	M	A	K	Q	L	Q	P
Query Conservation						.	.	.	.	.
Alig confidence						.	.	.	.	.
Template Conservation
Template Sequence		L	Y	R	D	A	G	X	T	F	A	I	P	A	Q	A	A	I	Y	S	V	D	T	L	H	P	N	N	A	G	H	R	V	I	A	R	K	L	Q	S	F	L	D	S
Template Known Secondary structure						S	S		B	T	T	S								B	S	S	S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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