Job Description P52126 Confidence 100.00% Date Wed Jan 25 15:20:57 GMT 2012 Rank 18 Aligned Residues 317 % Identity 16% Template c3oiyB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:reverse gyrase helicase domain; PDBTitle: helicase domain of reverse gyrase from thermotoga maritima Resolution 2.35 Å

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		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		G	Y	V	F	H	S	M	Q	F	H	I	F	D	L	L	K	S	G	Q	N	V	V	L	S	A	P	T	S	M	G	K	S	A	I	V	D	S	L	L	.	.	G	M	G	T	L	K	R	L	V	L	V	V	P	T	V	A	L	A	D	E	T	R	R	R	L	Q	E	R	F	G	D	R	Y	Q	I	I	H	H	S
Query Conservation																																									.	.
Alig confidence																																									.	.
Template Conservation
Template Sequence		G	K	D	L	T	G	Y	Q	R	L	W	A	K	R	I	V	Q	G	K	S	F	T	M	V	A	P	T	G	V	G	K	T	T	F	G	M	M	T	A	L	W	L	A	R	K	G	K	K	S	A	L	V	F	P	T	V	T	L	V	K	Q	T	L	E	R	L	Q	K	L	A	D	E	K	V	K	I	F	G	F	Y
Template Known Secondary structure		S	S														T	T	T								S	S		T	T														T	T	T								S	S																	S	S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		176	.	.	.	180													.	.	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Query Sequence		S	Q	V	C	H	.	.	.	.	.	.	.	.	.	.	.	.	S	D	Q	A	V	Y	V	L	T	Q	E	R	V	N	E	.	.	.	R	D	D	I	V	D	I	D	L	F	V	I	D	E	F	Y	K	L	A	F	R	Q	L	K	S	G	D	I	D	H	Q	D	E	R	V	I	E	L	N	I	A	L	S	K	L
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation
Template Sequence		S	S	M	K	K	E	E	K	E	K	F	E	K	S	F	E	E	D	D	Y	H	I	L	V	F	S	T	Q	F	V	S	K	N	R	E	K	L	S	Q	K	R	F	D	F	V	F	V	D	D	V	D	A	V	L	K	A	S	R	N	I	D	T	L	L	M	M	V	G	I	P	E	E	I	I	R	K	A	F	S	T
Template Known Secondary structure		T	T	S															T			S																	T	T				S					S							T	S											T	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
													241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.				.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	L	K	V	S	R	Q	F	Y	L	T	G	P	F	V	N	S	.	.	.	I	R	G	L	E	K	L	G	Y	P	H	T	F	V	S	T	D	F	N	T	V	A	L	D	V	K	T	F	G	I	K	A	N	D	D	K	A	K	L	K	A	L	G	E	I	A	H	A	C	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																	.	.	.																																	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.
Template Sequence		I	K	Q	G	K	I	Y	E	R	P	K	N	L	K	P	G	I	L	V	V	S	S	A	T	A	K	P	R	G	I	R	P	L	L	F	R	D	L	L	N	F	T	V	G	R	L	V	S	V	A	R	N	I	T	H	V	R	I	S	S	R	S	.	.	.	.	.	.	K	E	K	L	V	E	L	L	E	I	F	R
Template Known Secondary structure				T	T							T	T										S	S							S	T	T							S	S																			S	S			.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.							.	.	300	.	.	.	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	T	I	I	Y	C	K	S	P	T	V	A	G	L	V	A	R	E	L	I	R	L	G	H	G	T	P	T	E	N	P	H	V	D	W	V	S	E	E	F	D	A	D	W	D	Y	T	V	A	L	R	N	G	I	G	L	H	F	G	A	L	P	R	A	L	Q	Q	Y	T	A	D	Q	F	N	A	G	K	L	R
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	G	I	L	I	F	A	Q	T	E	E	E	G	K	E	L	Y	E	Y	L	K	R	F	K	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	G	E	T	W	S	E	F	E	K	N	F	E	D	F	K	V	G	K	I	N
Template Known Secondary structure		S	S						S	S														T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	S											T	T	S		S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.																																		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	L	C	T	S	T	I	I	E	G	V	N	T	I	A	K	N	V	V	I	Y	D	N	R	D	G	T	R	S	I	D	K	F	T	H	G	N	I	K	G	R	A	G	R	M	G	V	H	F	V	G	K	I	F	C	L	E	E	I	P	E	D	N	L	N	Q	E	V	D
Query Conservation
Alig confidence																												.	.	.
Template Conservation																												.	.	.
Template Sequence		I	L	I	G	V	Q	A	Y	Y	V	D	L	P	E	R	I	K	Y	V	I	F	W	G	T	P	S	.	.	.	G	P	D	V	Y	T	Y	I	Q	A	S	G	R	S	S	R	I	L	N	G	V	L	V	K	G	V	S	V	I	F	E	E	D	E	E	I	F	E	S	L	K
Template Known Secondary structure							T	T						T	T	T								S			T	.	.	.	T	T											T	T					T	T
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.				.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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