Job Description P52126 Confidence 99.90% Date Wed Jan 25 15:20:57 GMT 2012 Rank 74 Aligned Residues 159 % Identity 11% Template c3llmB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase a; PDBTitle: crystal structure analysis of a rna helicase Resolution 2.80 Å

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		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.								140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																																									.	.	.	.	.	.	.																																.	.	.
Query SS confidence																																									.	.	.	.	.	.	.																																.	.	.
Query Sequence		F	H	S	M	Q	F	H	I	F	D	L	L	K	S	G	Q	N	V	V	L	S	A	P	T	S	M	G	K	S	A	I	V	D	S	L	L	G	M	G	.	.	.	.	.	.	.	T	L	K	R	L	V	L	V	V	P	T	V	A	L	A	D	E	T	R	R	R	L	Q	E	R	F	G	D	R	Y	Q	.	.	.
Query Conservation																																									.	.	.	.	.	.	.																																.	.	.
Alig confidence																																									.	.	.	.	.	.	.																																.	.	.
Template Conservation
Template Sequence		V	K	K	F	E	S	E	I	L	E	A	I	S	Q	N	S	V	V	I	I	R	G	A	T	G	C	G	K	T	T	Q	V	P	Q	F	I	L	D	D	F	I	Q	N	D	R	A	A	E	C	N	I	V	V	T	Q	P	R	R	I	S	A	V	S	V	A	E	R	V	A	F	E	R	G	E	E	P	G	K	S	C
Template Known Secondary structure		G	G	G	G												S								T	T	S	S																T	T		G	G	G								S	S														T	T	T			T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
				171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure		.	.																												.	.
Query SS confidence		.	.																												.	.
Query Sequence		.	.	I	I	H	H	S	S	Q	V	C	H	S	D	Q	A	V	Y	V	L	T	Q	E	R	V	N	E	R	D	.	.	D	I	V	D	I	D	L	F	V	I	D	E	F	Y	K	L	A	F	R	Q	L	K	S	G	D	I	D	H	Q	D	E	R	V	I	E	L	N	I	A	L	S	K	L	L	K	V	S	R	Q
Query Conservation		.	.																												.	.
Alig confidence		.	.																												.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	Y	S	V	R	F	E	S	I	L	P	R	P	H	A	S	I	X	F	C	T	V	G	V	L	L	R	K	L	E	A	G	I	R	G	I	S	H	V	I	V	D	E	I	H	E	R	D	I	N	T	D	F	L	L	V	V	L	R	D	V	V	Q	.	.	.	.	.	.	.	.	.	.	.	A	Y	P	E	V	R
Template Known Secondary structure						T	T							S	S	S																			T	T									T	T	S																		.	.	.	.	.	.	.	.	.	.	.			T	T	S
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.												.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Y	L	T	G	P	F	V	N	S	I	R	G	L	E	K	L	G	Y	P	H	T	F	V	S
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		I	V	L	X	S	A	T	I	.	D	T	S	X	F	C	E	Y	F	F	N	C	P	I	I	E
Template Known Secondary structure							S	S	S	.									T	T	S
Template Predicted Secondary structure										.
Template SS confidence
		539	540	.	.	.	.	.	.		.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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