Job Description P52126 Confidence 100.00% Date Wed Jan 25 15:20:57 GMT 2012 Rank 14 Aligned Residues 312 % Identity 15% Template c3kx2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna PDBTitle: crystal structure of prp43p in complex with adp Resolution 2.20 Å

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		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.						.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.
Predicted Secondary structure																																							.	.	.	.	.																													.	.	.	.
Query SS confidence																																							.	.	.	.	.																													.	.	.	.
Query Sequence		H	S	M	Q	F	H	I	F	D	L	L	K	S	G	Q	N	V	V	L	S	A	P	T	S	M	G	K	S	A	I	V	D	S	L	L	G	M	.	.	.	.	.	G	T	L	K	R	L	V	L	V	V	P	T	V	A	L	A	D	E	T	R	R	R	L	Q	E	R	F	G	.	.	.	.	D	R	Y	Q	I	I
Query Conservation																																							.	.	.	.	.																													.	.	.	.
Alig confidence																																							.	.	.	.	.																													.	.	.	.
Template Conservation
Template Sequence		H	A	Q	R	D	E	F	L	K	L	Y	Q	N	N	Q	I	M	V	F	V	G	E	T	G	S	G	K	T	T	Q	I	P	Q	F	V	L	F	D	E	M	P	H	L	E	N	T	Q	V	A	C	T	Q	P	R	R	V	A	A	M	S	V	A	Q	R	V	A	E	E	M	D	V	K	L	G	E	E	V	G	Y	S
Template Known Secondary structure		G	G	G												S								T	T	S	S															G	G	G	G	T								S																T	T			B	T	T	T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		H	H	S	S	Q	V	C	H	S	D	Q	A	V	Y	V	L	T	Q	E	R	V	N	E	R	D	.	.	.	.	D	I	V	D	I	D	L	F	V	I	D	E	F	Y	K	L	A	F	R	Q	L	K	S	G	D	I	D	H	Q	D	E	R	V	I	E	L	N	I	A	L	S	K	L	L	K	V	S	R	Q	F	Y
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	R	F	E	N	K	T	S	N	K	T	I	L	K	Y	M	T	D	G	M	L	L	R	E	A	M	E	D	H	D	L	S	R	Y	S	C	I	I	L	D	E	A	H	E	R	T	L	A	T	D	I	L	M	G	L	L	K	Q	V	V	K	.	.	.	.	.	.	.	.	.	.	.	R	R	P	D	L	K	I	I
Template Known Secondary structure			T	T						T	T																			T	T		T	T									G	G	G																		.	.	.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.												.	.	.	240	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.			.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		L	T	G	P	F	V	N	S	I	R	G	L	E	K	L	G	Y	P	H	T	F	V	S	T	D	F	N	T	V	A	L	D	V	K	T	F	G	I	K	A	N	D	D	K	A	K	L	K	A	L	G	E	I	A	H	A	.	.	C	V	D	A	T	I	I	Y	C	K	S	P	T	V	A	G	L	V	A	R	E	L
Query Conservation																																																										.	.
Alig confidence								.																																																		.	.
Template Conservation								.
Template Sequence		I	M	S	A	T	L	.	D	A	E	K	F	Q	R	Y	F	N	D	A	P	L	L	A	V	P	G	R	T	Y	P	V	E	L	Y	Y	T	P	E	F	Q	R	D	Y	L	D	S	A	I	R	T	V	L	Q	I	H	A	T	E	E	A	G	D	I	L	L	F	L	T	G	E	D	E	I	E	D	A	V	R	K	I
Template Known Secondary structure					S	S	S	.									T	T	S																			S	S			S																	S		S								S	S
Template Predicted Secondary structure								.
Template SS confidence
		245	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.						.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																																																													.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.
Query Sequence		I	R	L	G	H	G	T	P	T	E	N	P	H	V	D	W	V	S	E	E	F	D	A	D	W	D	Y	T	V	A	L	R	N	G	I	G	L	H	F	G	A	L	P	R	A	L	Q	Q	Y	T	A	D	Q	F	N	A	G	K	L	.	.	.	.	.	R	F	L	L	C	T	S	T	I	I	E	G	V	N	T	I
Query Conservation																																																													.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	E	G	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	R	E	E	G	C	G	P	L	S	V	Y	P	L	Y	G	S	L	P	P	H	Q	Q	Q	R	I	F	E	P	A	P	E	S	H	N	G	R	P	G	R	K	V	V	I	S	T	N	I	A	E	T	S	L	T	I	D
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T	T							G	G	G	G	S						S	S	S	S										T					S				T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		324	.	.	.	.	.																		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		402	.	.	.	.	.										.	.	410	.	.	.	.						.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.								.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.								.	.	.	.	.
Query Sequence		A	K	N	V	V	I	.	.	.	.	.	.	.	.	.	Y	D	N	R	D	G	T	.	.	.	.	.	R	S	I	D	K	F	T	H	G	N	I	K	G	R	A	G	R	M	G	V	H	F	V	G	K	I	F	C	L	E	E
Query Conservation								.	.	.	.	.	.	.	.	.								.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.								.	.	.	.	.																					.	.	.
Template Conservation																																																	.	.	.
Template Sequence		G	I	V	Y	V	V	D	P	G	F	S	K	Q	K	V	Y	N	P	R	I	R	V	E	S	L	L	V	S	P	I	S	K	A	S	A	Q	Q	R	A	G	R	A	G	R	T	R	P	.	.	.	G	K	C	F	R	L	Y	T
Template Known Secondary structure		T																	T	T	T	T																				G	G	G	S	S	S	S	.	.	.						S	S
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.				.	.	.	.	.	.	440	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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