Job Description P52126 Confidence 99.91% Date Wed Jan 25 15:20:57 GMT 2012 Rank 69 Aligned Residues 186 % Identity 17% Template c3iuyB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx53; PDBTitle: crystal structure of ddx53 dead-box domain Resolution 2.40 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.
Predicted Secondary structure																.																																																										.	.	.
Query SS confidence																.																																																										.	.	.
Query Sequence		K	S	G	L	F	P	Y	L	K	K	E	F	T	S	.	L	T	P	D	D	L	R	V	L	E	L	Y	R	T	P	F	S	D	G	Y	V	F	H	S	M	Q	F	H	I	F	D	L	L	K	S	G	Q	N	V	V	L	S	A	P	T	S	M	G	K	S	A	I	V	D	S	L	L	.	.	.	G	M	G	T	L
Query Conservation																.																																																										.	.	.
Alig confidence																.																			.	.	.																																					.	.	.
Template Conservation																																			.	.	.
Template Sequence		E	K	R	L	I	P	K	P	T	C	R	F	K	D	A	F	Q	Q	Y	P	D	L	L	K	S	I	I	R	V	G	I	L	K	.	.	.	P	T	P	I	Q	S	Q	A	W	P	I	I	L	Q	G	I	D	L	I	V	V	A	Q	T	G	T	G	K	T	L	S	Y	L	M	P	G	F	I	H	L	D	S	N	G
Template Known Secondary structure		S										S						T	T												T			S	.	.	.														T	T									T	T	S															T
Template Predicted Secondary structure																																			.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.				.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.
Query Sequence		K	R	L	V	L	V	V	P	T	V	A	L	A	D	E	T	R	R	R	L	Q	E	R	F	G	D	R	Y	Q	I	I	H	H	S	S	Q	V	C	H	S	D	Q	A	V	Y	V	L	T	Q	E	R	V	N	E	R	D	.	.	.	.	.	D	I	V	D	I	D	L	F	V	I	D	E	F	Y	K	L	A	F	R
Query Conservation																																																										.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.																.	.	.	.	.																	.	.	.
Template Conservation																																					.	.	.	.	.	.																																					.	.	.
Template Sequence		P	G	M	L	V	L	T	P	T	R	E	L	A	L	H	V	E	A	E	C	S	K	Y	S	Y	K	G	L	K	S	I	C	I	Y	G	.	.	.	.	.	.	V	D	I	I	I	A	T	P	G	R	L	N	D	L	Q	M	N	N	S	V	N	L	R	S	I	T	Y	L	V	I	D	E	A	D	K	M	.	.	.
Template Known Secondary structure			S						S	S																	T	T									.	.	.	.	.	.		S															T	T		S			T	T													.	.	.
Template Predicted Secondary structure																																					.	.	.	.	.	.																																					.	.	.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340							.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		Q	L	K	S	G	D	I	D	H	Q	D	E	R	V	I	E	L	N	I	A	L	S	K	L	L	K	V	S	R	Q	F	Y	L	T	G	P	F	V	N	S	I	.	R	G	L	E	K	L	G	Y	P	H	T	F	V	S	T
Query Conservation																																											.
Alig confidence		.	.	.	.	.	.	.	.																	.																	.
Template Conservation		.	.	.	.	.	.	.	.																	.
Template Sequence		.	.	.	.	.	.	.	.	L	D	M	E	F	E	P	Q	I	R	K	I	L	L	D	V	.	R	P	D	R	Q	T	V	M	T	S	A	T	W	P	D	T	V	R	Q	L	A	L	S	Y	L	K	D	P	M	I	V	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.			T	T												S	.		S	S								S	S														S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																	.
Template SS confidence
										391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions