Job Description P52126 Confidence 100.00% Date Wed Jan 25 15:20:57 GMT 2012 Rank 20 Aligned Residues 347 % Identity 14% Template c3i5yA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase mss116; PDBTitle: structure of mss116p bound to ssrna containing a single 5-bru and amp-2 pnp Resolution 2.49 Å

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		74	.	.	.	.	.	80	.	.	.	.	.						.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.															.																		.	.																							.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.															.																		.	.																							.	.	.	.	.	.	.
Query Sequence		K	K	E	F	T	S	L	T	P	D	D	L	.	.	.	.	.	R	V	L	E	L	Y	R	T	P	F	S	D	G	Y	.	V	F	H	S	M	Q	F	H	I	F	D	L	L	K	S	G	Q	.	.	N	V	V	L	S	A	P	T	S	M	G	K	S	A	I	V	D	S	L	L	G	M	.	.	.	.	.	.	.
Query Conservation														.	.	.	.	.															.																		.	.																							.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.															.																		.	.																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	D	N	S	K	E	V	T	L	D	S	L	L	E	E	G	V	L	D	K	E	I	H	K	A	I	T	R	M	E	F	P	G	L	T	P	V	Q	Q	K	T	I	K	P	I	L	S	S	E	D	H	D	V	I	A	R	A	K	T	G	T	G	K	T	F	A	F	L	I	P	I	F	Q	H	L	I	N	T	K	F
Template Known Secondary structure			S	S													T	S	S										T	T			S	S															S	S										T	T	S																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
				139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.															.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query SS confidence		.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query Sequence		.	.	G	T	L	K	R	L	V	L	V	V	P	T	V	A	L	A	D	E	T	R	R	R	L	Q	E	R	F	G	D	R	Y	Q	I	I	H	H	S	S	Q	V	C	H	S	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	Y	V	L	T	Q	E	R	V	N	E	R	D	D	.	.	.	.
Query Conservation		.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Alig confidence		.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation
Template Sequence		D	S	Q	Y	M	V	K	A	V	I	V	A	P	T	R	D	L	A	L	Q	I	E	A	E	V	K	K	I	H	D	M	N	Y	G	L	K	K	Y	A	C	V	S	L	V	G	G	T	D	F	R	A	A	M	N	K	M	N	K	L	R	P	N	I	V	I	A	T	P	G	R	L	I	D	V	L	E	K	Y	S	N
Template Known Secondary structure		S	S	T	T	S								S	S																	T		G	G	G	G	G	S							T	T	S															S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
				199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure		.	.																																																																										.	.	.	.	.
Query SS confidence		.	.																																																																										.	.	.	.	.
Query Sequence		.	.	I	V	D	I	D	L	F	V	I	D	E	F	Y	K	L	A	F	R	Q	L	K	S	G	D	I	D	H	Q	D	E	R	V	I	E	L	N	I	A	L	S	K	L	L	K	V	S	R	Q	F	Y	L	T	G	P	F	V	N	S	I	R	G	L	E	K	L	G	Y	P	H	T	F	V	S	.	.	.	.	.
Query Conservation		.	.																																																																										.	.	.	.	.
Alig confidence		.	.																										.	.	.	.	.																																												.	.	.	.	.
Template Conservation																													.	.	.	.	.
Template Sequence		K	F	F	R	F	V	D	Y	K	V	L	D	E	A	D	R	L	L	E	I	G	F	R	D	D	L	E	.	.	.	.	.	T	I	S	G	I	L	N	E	K	N	S	K	S	A	D	N	I	K	T	L	L	F	S	A	T	L	D	D	K	V	Q	K	L	A	N	N	I	M	N	K	K	E	C	L	F	L	D	T
Template Known Secondary structure					T	T								T					T	S	T	T	T						.	.	.	.	.											S	S		T	T									S	S			T						T	G	G	G			S	S							S
Template Predicted Secondary structure																													.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.						.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
				272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300							.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure		.	.																														.	.	.	.	.	.
Query SS confidence		.	.																														.	.	.	.	.	.
Query Sequence		.	.	T	D	F	N	T	V	A	L	D	V	K	T	F	G	I	K	A	N	D	D	K	A	K	L	K	A	L	G	E	.	.	.	.	.	.	I	A	H	A	C	V	D	A	T	I	I	Y	C	K	S	P	T	V	A	G	L	V	A	R	E	L	I	R	L	G	H	G	T	P	T	E	N	P	H	V	D	W	V
Query Conservation		.	.																														.	.	.	.	.	.
Alig confidence		.	.																														.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	K	N	E	P	E	A	H	E	R	I	D	Q	S	V	V	I	S	E	K	F	A	N	S	I	F	A	A	V	E	H	I	K	K	Q	I	K	E	R	D	S	N	Y	K	A	I	I	F	A	P	T	V	K	F	T	S	F	L	C	S	I	L	K	N	E	F	K	K	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S		S	S	S		S	S		T	T									S	S	S	T																	T	T	T									S	S																T	T	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	E	F	D	A	D	W	D	Y	T	V	A	L	R	N	G	I	G	L	H	F	G	A	L	P	R	A	L	Q	Q	Y	T	A	D	Q	F	N	A	G	K	L	R	F	L	L	C	T	S	T	I	I	E	G	V	N	T	I	A	K	N	V	V	I	Y	D	N	R	D	G	T	R	S	I	D	K	F	T	H	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	P	I	L	E	F	H	G	K	I	T	Q	N	K	R	T	S	L	V	K	R	F	K	K	D	E	S	G	I	L	V	C	T	D	V	G	A	R	G	M	D	F	P	N	V	H	E	V	L	Q	.	.	.	.	I	G	V	P	S	E	L	A	N	Y	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S						S	T	T	S																S	S							G	G	G	T	S	S				T	T							.	.	.	.		S			S	S	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.
Template SS confidence
																400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450					.	.	.	.	.	.	.	.	.	460	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	K	G	R	A	G	R	M	G	V	H	F	V	G	K	I	F	C	L	E	E	I	P	E	D	N	L	N	Q	E	V	D
Query Conservation
Alig confidence														.	.
Template Conservation														.	.
Template Sequence		H	R	I	G	R	T	A	R	S	G	K	E	.	.	G	S	S	V	L	F	I	C	K	D	E	L	P	F	V	R	E	L	E
Template Known Secondary structure					T	T	S	S		T	T			.	.									G	G	G
Template Predicted Secondary structure														.	.
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.	.			.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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