Return to main results Retrieve Phyre Job Id

Job DescriptionP52126
Confidence99.85%DateWed Jan 25 15:20:57 GMT 2012
Rank89Aligned Residues188
% Identity17%Templatec3fmpD_
PDB info PDB header:oncoprotein/hydrolaseChain: D: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: crystal structure of the nucleoporin nup214 in complex with the dead-2 box helicase ddx19
Resolution3.19 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   71........80.........90.........100.........110.... .....120.........130........ .140...
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Query Sequence  PYLKKEFTSLTPDDLRVLELYRTPFSDGYVFHSMQFHIFDLLKS. . GQNVVLSAPTSMGKSAIVDSLLGM. . . . . GTLKR
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Template Sequence  LYSVKSFEELRLKPQLLQGVYAMGFNR. . . PSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ
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   88.90.........100.........110.... .....120.........130.........140.........150.........160....
 
   144.....150.........160.........170..... ....180.........190....... ..200.........210
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Query Sequence  LVLVVPTVALADETRRRLQERFGDRYQIIHHS. . . . . . . SQVCHSDQAVYVLTQERVNERD. . . . . . DIVDIDLFVIDEF
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Template Sequence  CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA
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   165....170.........180.........190.........200.........210.........220.........230.........240....
 
   211........220.........230.........240.........250....... ..260.........270..
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Query Sequence  YKLAFRQLKSGDIDHQDERVIELNIALSKLLKVSRQFYLTGPFVNSI. RGLEKLGYPHTFVST
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Template Sequence  DVM. . . . . . . . . . . IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIK
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   245.. ..250.........260.........270.........280.........290......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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