Job Description P52126 Confidence 99.94% Date Wed Jan 25 15:20:57 GMT 2012 Rank 58 Aligned Residues 187 % Identity 15% Template c3fe2B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx5; PDBTitle: human dead-box rna helicase ddx5 (p68), conserved domain i in complex2 with adp Resolution 2.60 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.											.	140
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Y	L	K	K	E	F	T	S	L	T	P	D	D	L	R	V	L	E	L	Y	R	T	P	F	S	D	G	Y	V	F	H	S	M	Q	F	H	I	F	D	L	L	K	S	G	Q	N	V	V	L	S	A	P	T	S	M	G	K	S	A	I	V	D	S	L	L	G	M	.	.	.	.	.	.	.	.	.	.	G	T
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.
Template Sequence		P	K	P	V	L	N	F	Y	E	A	N	F	P	A	N	V	M	D	V	I	A	R	Q	N	F	T	E	.	.	.	P	T	A	I	Q	A	Q	G	W	P	V	A	L	S	G	L	D	M	V	G	V	A	Q	T	G	S	G	K	T	L	S	Y	L	L	P	A	I	V	H	I	N	H	Q	P	F	L	E	R	G	D
Template Known Secondary structure						S	S					T												T	T			S	.	.	.														T	T									T	T	S																T	S					T	T
Template Predicted Secondary structure																													.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180										.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Query Sequence		L	K	R	L	V	L	V	V	P	T	V	A	L	A	D	E	T	R	R	R	L	Q	E	R	F	G	D	R	Y	Q	I	I	H	H	S	S	Q	V	C	H	.	.	.	.	.	.	.	.	.	S	D	Q	A	V	Y	V	L	T	Q	E	R	V	N	E	R	D	.	.	.	.	.	D	I	V	D	I	D	L	F	V
Query Conservation																																										.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation
Template Sequence		G	P	I	C	L	V	L	A	P	T	R	E	L	A	Q	Q	V	Q	Q	V	A	A	E	Y	C	R	A	C	R	L	K	S	T	C	I	Y	G	G	A	P	K	G	P	Q	I	R	D	L	E	R	G	V	E	I	C	I	A	T	P	G	R	L	I	D	F	L	E	C	G	K	T	N	L	R	R	T	T	Y	L	V
Template Known Secondary structure				S						S	S																		T	T								T	T	S											S			S															T	T	S				T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		I	D	E	F	Y	K	L	A	F	R	Q	L	K	S	G	D	I	D	H	Q	D	E	R	V	I	E	L	N	I	A	L	S	K	L	L	K	V	S	R	Q	F	Y	L	T	G	P	F	V	N	S	I	.	R	G	L	E	K	L	G	Y	P	H	T	F	V	S	T
Query Conservation																																																					.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.																.																	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		L	D	E	A	D	R	M	L	.	.	.	.	.	.	.	.	.	.	.	D	M	G	F	E	P	Q	I	R	K	I	V	D	Q	I	.	R	P	D	R	Q	T	L	M	W	S	A	T	W	P	K	E	V	R	Q	L	A	E	D	F	L	K	D	Y	I	H	I	N
Template Known Secondary structure			T	T						.	.	.	.	.	.	.	.	.	.	.		T	T											T	S	.		T	T								S															S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		247	.	.	250	.	.	.	.												.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions