Job Description P52126 Confidence 100.00% Date Wed Jan 25 15:20:57 GMT 2012 Rank 33 Aligned Residues 347 % Identity 15% Template c2vsxA_ PDB info PDB header:translation/hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase eif4a; PDBTitle: crystal structure of a translation initiation complex Resolution 2.8 Å

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		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.						.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.
Query Sequence		L	K	K	E	F	T	S	L	T	P	D	D	L	R	V	L	E	L	Y	R	T	P	F	S	D	G	Y	V	F	H	S	M	Q	F	H	I	F	D	L	L	K	S	G	Q	N	V	V	L	S	A	P	T	S	M	G	K	S	A	I	V	D	S	L	L	G	M	.	.	.	.	.	G	T	L	K	R	L	V	L	V
Query Conservation																																																																				.	.	.	.	.
Alig confidence																											.	.	.																																							.	.	.	.	.
Template Conservation																											.	.	.
Template Sequence		V	V	Y	K	F	D	D	M	E	L	D	E	N	L	L	R	G	V	F	G	Y	G	F	E	E	.	.	.	P	S	A	I	Q	Q	R	A	I	M	P	I	I	E	G	H	D	V	L	A	Q	A	Q	S	G	T	G	K	T	G	T	F	S	I	A	A	L	Q	R	I	D	T	S	V	K	A	P	Q	A	L	M	L
Template Known Secondary structure						G	G	G	G	T											T	T	T			S	.	.	.														T	T									T	T	S	S															T	T			S
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	T	V	A	L	A	D	E	T	R	R	R	L	Q	E	R	F	G	D	R	Y	Q	I	I	H	H	S	S	Q	V	C	H	S	D	Q	A	V	Y	V	L	T	Q	E	R	V	N	E	R	D	D	I	V	D	I	D	L	F	V	I	D	E	F	Y	K	L	A	F	R	Q	L	K	S	G	D	I	D	H	Q	D
Query Conservation
Alig confidence																						.	.																																				.	.	.	.	.	.
Template Conservation																						.	.																																				.	.	.	.	.	.
Template Sequence		A	P	T	R	E	L	A	L	Q	I	Q	K	V	V	M	A	L	A	F	H	.	.	M	D	I	K	V	H	A	C	I	G	L	R	D	A	Q	I	V	V	G	T	P	G	R	V	F	D	N	I	Q	R	R	R	F	R	T	.	.	.	.	.	.	D	K	I	K	M	F	I	L	D	E	A	D	E	M	L	S	S
Template Known Secondary structure			S	S															T	S	S	.	.	S											S	S		S															T	T		S			.	.	.	.	.	.	T	T								S							T
Template Predicted Secondary structure																						.	.																																				.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.							.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280				.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		E	R	V	I	E	L	N	I	A	L	S	K	L	L	K	V	S	R	Q	F	Y	L	T	G	P	F	V	N	S	I	R	G	L	E	K	L	G	Y	P	H	T	F	V	S	T	D	F	N	T	V	A	L	D	.	.	.	V	K	T	F	G	I	K	A	N	D	D	K	A	K	L	K	A	L	G	E	I	A	H	A
Query Conservation																																																							.	.	.
Alig confidence																																																							.	.	.
Template Conservation
Template Sequence		G	F	K	E	Q	I	Y	Q	I	F	T	L	L	P	P	T	T	Q	V	V	L	L	S	A	T	M	P	N	D	V	L	E	V	T	T	K	F	M	R	N	P	V	R	I	L	V	K	K	D	E	L	T	L	E	G	I	K	Q	F	Y	V	N	V	E	E	E	E	Y	K	Y	E	C	L	T	D	L	Y	D	S	I
Template Known Secondary structure		T												S		T	T								S															S	S													S	T	T										S	G	G	G												S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	V	D	A	T	I	I	Y	C	K	S	P	T	V	A	G	L	V	A	R	E	L	I	R	L	G	H	G	T	P	T	E	N	P	H	V	D	W	V	S	E	E	F	D	A	D	W	D	Y	T	V	A	L	R	N	G	I	G	L	H	F	G	A	L	P	R	A	L	Q	Q	Y	T	A	D	Q	F	N	A	G	K
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	V	T	Q	A	V	I	F	C	N	T	R	R	K	V	E	E	L	T	T	K	L	R	N	D	K	F	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	A	I	Y	S	D	L	P	Q	Q	E	R	D	T	I	M	K	E	F	R	S	G	S
Template Known Secondary structure				S							S	S														T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	S													T	T	T	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.																													.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	F	L	L	C	T	S	T	I	I	E	G	V	N	T	I	A	K	N	V	V	I	Y	D	N	R	D	G	T	R	S	I	D	K	F	T	H	G	N	I	K	G	R	A	G	R	M	G	V	H	F	V	G	K	I	F	C	L	E	E	I	P	E	D	N	L	N	Q	E	V	D	I	P	L	G	I	Q	G	I
Query Conservation
Alig confidence																										.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.																				.	.	.	.	.	.	.	.
Template Sequence		S	R	I	L	I	S	T	D	L	L	A	R	G	I	D	V	Q	Q	V	S	L	V	I	N	.	.	.	.	Y	D	L	P	A	N	K	E	N	Y	I	H	R	I	G	R	K	G	V	.	.	.	.	.	.	.	.	A	I	N	F	V	T	N	E	D	V	G	A	M	R	E	L	E	K	F	Y	S	T	Q	I	E
Template Known Secondary structure			S						S	G	G	G	S	S					S							.	.	.	.	S	S			S	S	G	G	G	G										.	.	.	.	.	.	.	.							S	S	S											T	T
Template Predicted Secondary structure																										.	.	.	.																				.	.	.	.	.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.					.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.									.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		465	.	.	.	.	470
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	P	I	N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	P	S	D	I
Template Known Secondary structure					S		T
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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