Job Description P52126 Confidence 100.00% Date Wed Jan 25 15:20:57 GMT 2012 Rank 5 Aligned Residues 584 % Identity 15% Template c2p6uA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase Resolution 3.14 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		V	F	H	S	M	Q	F	H	I	F	D	L	L	K	S	G	Q	N	V	V	L	S	A	P	T	S	M	G	K	S	A	I	V	D	S	L	L	G	M	G	.	.	T	L	K	R	L	V	L	V	V	P	T	V	A	L	A	D	E	T	R	R	R	L	Q	E	R	F	G	D	R	Y	Q	I	I	H	H	S	S	Q
Query Conservation																																										.	.
Alig confidence																																										.	.
Template Conservation
Template Sequence		I	L	F	P	P	Q	A	E	A	V	E	K	V	F	S	G	K	N	L	L	L	A	M	P	T	A	A	G	K	T	L	L	A	E	M	A	M	V	R	E	A	I	K	G	G	K	S	L	Y	V	V	P	L	R	A	L	A	G	E	K	Y	E	S	F	K	K	W	E	K	I	G	L	R	I	G	I	S	T	G	D
Template Known Secondary structure						S	S	T							T	T		S							S	S																			T								S	S												G	G	G	G	T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		178	.	180	.	.						.	.	.	.	.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.
Predicted Secondary structure							.	.	.	.	.																.	.	.	.	.																																													.	.
Query SS confidence							.	.	.	.	.																.	.	.	.	.																																													.	.
Query Sequence		V	C	H	S	D	.	.	.	.	.	Q	A	V	Y	V	L	T	Q	E	R	V	N	E	R	D	.	.	.	.	.	D	I	V	D	I	D	L	F	V	I	D	E	F	Y	K	L	A	F	R	Q	L	K	S	G	D	I	D	H	Q	D	E	R	V	I	E	L	N	I	A	L	S	K	L	L	.	.	K	V	S	R
Query Conservation							.	.	.	.	.																.	.	.	.	.																																													.	.
Alig confidence							.	.	.	.	.																.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	E	S	R	D	E	H	L	G	D	C	D	I	I	V	T	T	S	E	K	A	D	S	L	I	R	N	R	A	S	W	I	K	A	V	S	C	L	V	V	D	E	I	H	L	L	D	.	.	.	.	.	.	.	.	.	.	.	S	E	K	R	G	A	T	L	E	I	L	V	T	K	M	R	R	M	N	K	A	L
Template Known Secondary structure			S				T	T	G	G	G		S															T	T		S	S	G	G	G							T	T	G	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.		T	T	T																T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.												.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.										290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.
Query Sequence		Q	F	Y	L	T	G	P	F	V	N	S	I	R	G	L	E	K	L	G	Y	P	H	T	F	V	S	T	D	F	N	T	V	A	L	D	V	K	T	F	G	I	K	A	N	.	.	.	.	.	.	.	.	.	D	D	K	A	K	L	K	A	L	G	E	I	A	H	A	C	V	D	A	T	I	I	Y	C	K	S	P
Query Conservation																																														.	.	.	.	.	.	.	.	.
Alig confidence																					.																									.	.	.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		R	V	I	G	L	S	A	T	A	P	N	V	T	E	I	A	E	W	L	.	D	A	D	Y	Y	V	S	D	W	R	P	V	P	L	V	E	G	V	L	C	E	G	T	L	E	L	F	D	G	A	F	S	T	S	R	R	V	K	F	E	E	L	V	E	E	C	V	A	E	N	G	G	V	L	V	F	E	S	T	R
Template Known Secondary structure											T	T									.	T										S	S									T	T							T	T						B														T	S							S	S
Template Predicted Secondary structure																					.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		T	V	A	G	L	V	A	R	E	L	I	R	L	G	H	G	T	P	T	E	N	P	H	V	D	W	V	S	E	E	F	D	.	.	A	D	W	D	Y	T	V	A	L	R	N	G	I	G	L	H	F	G	A	L	P	R	A	L	Q	Q	Y	T	A	D	Q	F	N	A	G	K	L	R	F	L	L	C	T	S	T	I
Query Conservation																																		.	.
Alig confidence																																		.	.
Template Conservation
Template Sequence		R	G	A	E	K	T	A	V	K	L	S	A	I	T	A	K	Y	V	E	N	E	G	L	E	K	A	I	L	E	E	N	E	G	E	M	S	R	K	L	A	E	C	V	R	K	G	A	A	F	H	H	A	G	L	L	N	G	Q	R	R	V	V	E	D	A	F	R	R	G	N	I	K	V	V	V	A	T	P	T	L
Template Known Secondary structure																	T	T												T	T			S												T	S						T	T	S															T	S								T	T
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450			.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.			.	.	.	470
Predicted Secondary structure																																																										.	.																	.	.
Query SS confidence																																																										.	.																	.	.
Query Sequence		I	E	G	V	N	T	I	A	K	N	V	V	I	Y	D	N	R	D	G	T	R	S	I	D	K	F	T	H	G	N	I	K	G	R	A	G	R	M	G	V	H	F	V	G	K	I	F	C	L	E	E	I	P	E	D	N	.	.	L	N	Q	E	V	D	I	P	L	G	I	Q	G	I	D	T	.	.	P	I	N	L
Query Conservation																																																										.	.																	.	.
Alig confidence		.	.	.																		.																																				.	.																	.	.
Template Conservation		.	.	.																		.
Template Sequence		.	.	.	V	N	L	P	A	R	R	V	I	V	R	S	L	Y	R	F	K	.	R	I	K	V	S	E	Y	K	Q	M	A	G	R	A	G	R	P	G	M	D	E	R	G	E	A	I	I	I	V	G	K	R	D	R	E	I	A	V	K	R	Y	I	F	G	E	P	E	R	I	T	S	K	L	G	V	E	T	H	L
Template Known Secondary structure		.	.	.						S							S	S				.												T	T				T	T	T		S	S									S	S		T						T	T	T	S										T	T	S
Template Predicted Secondary structure		.	.	.																		.
Template SS confidence
					336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		471	.	.	.	.	.	.	.	.			480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		L	A	S	V	Q	P	D	H	L	.	.	S	E	F	S	Q	D	R	F	D	E	V	F	I	N	D	R	V	S	I	D	L	V	K	K	H	S	Y	F	R	V	E	Q	F	E	M	L	Q	S	M	F	E	M	M	D	D	N	E	F	S	S	L	V	F	H	W	T	P	A	T	N	F	L	K	T	F	A	K	I	I
Query Conservation											.	.
Alig confidence											.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Sequence		R	F	H	S	L	S	I	I	C	D	G	Y	A	K	T	L	E	E	L	E	D	F	F	A	D	T	F	F	F	K	Q	N	E	I	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Y	E	L	E	R	V	V	R	Q	L	E	N	W	G	M	V	V	E	A	A	H	L	A	P	.	.	.	.
Template Known Secondary structure												T	S		S	S										T	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T	S				S	S	S				.	.	.	.
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.																.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.		.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
Predicted Secondary structure																											.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	L	V	P	H	T	F	S	R	N	G	V	P	V	K	P	T	D	V	M	I	A	K	L	.	A	G	Y	L	S	A	E	S	Y	S	E	Y	L	K	N	Q	I	D	Y	A	R	Q	W	I	S	E	G	E	K	R	T	L	S	I	A	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																									.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	T	K	L	G	S	L	V	S	R	L	Y	I	D	P	L	T	G	F	I	F	H	D	V	L	S	R	M	E	L	S	D	I	G	A	L	H	L	I	C	R	T	P	D	M	E	R	L	T	V	R	K	T	D	S	W	V	E	E	E	A	F	R	L	R	K	E	L	S	Y	Y	P	S	D	F	S	V	E	Y	D
Template Known Secondary structure		.											T																												T	T	S	T	T	S							T	T											T	T	T	T	S	S					T	T	S	T	T
Template Predicted Secondary structure		.
Template SS confidence
			477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
								611	.	.	.	.	.	.	.	.	620	.	.																.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	N	D	L	K	L	I	T	N	T	F	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	P	K	V	L	S	L	M	E	D	V	V	K	H	H	A	V	K	R	G	I	R	S	K	V	D	Y	T	H	V	K	L	A	F	E	S	F	H	L	P	P	G	V	N	A	L
Query Conservation		.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	F	L	S	E	V	K	T	A	L	C	L	K	D	W	I	E	E	K	D	E	D	E	I	C	A	K	Y	G	I	A	P	G	D	L	R	R	I	V	E	T	A	E	W	L	S	N	A	M	N	R	I	A	E	E	V	G	N	T	S	V	S	G	L	T	E	R	I	K	H	G	V	K	E	E	L	L	E	L	V
Template Known Secondary structure																		T	T											T																												T			T	T	T	T								T			S	S	S
Template Predicted Secondary structure
Template SS confidence
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	I	G	I	P	I	Q	T	L	H	R	L	V	D	L	L	E	F	S	D	E	A	D	V	D	E	L	S	Q	Y	L	R	D	T	Q	D	I	W	S	R	S	I	G	Y	V	D	Q	M	F	I	R	R	A	L	G	I	R
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.
Template Sequence		R	I	R	H	I	G	R	V	R	A	R	K	L	Y	N	A	G	I	R	N	.	.	.	.	.	.	.	.	A	E	D	I	V	R	H	R	E	K	V	A	S	L	I	G	R	G	I	A	E	R	V	V	E	G	I	S	V	K
Template Known Secondary structure		T	S	S												T	S	S			S	.	.	.	.	.	.	.	.							T								S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.
Template SS confidence
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.									.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.