Job Description P52126 Confidence 99.90% Date Wed Jan 25 15:20:57 GMT 2012 Rank 71 Aligned Residues 172 % Identity 19% Template c2kbeA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dbp5; PDBTitle: solution structure of amino-terminal domain of dbp5p Resolution UNK

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.						.	140	.	.	.
Predicted Secondary structure																																													.	.																										.	.	.	.	.
Query SS confidence																																													.	.																										.	.	.	.	.
Query Sequence		P	Y	L	K	K	E	F	T	S	L	T	P	D	D	L	R	V	L	E	L	Y	R	T	P	F	S	D	G	Y	V	F	H	S	M	Q	F	H	I	F	D	L	L	K	.	.	S	G	Q	N	V	V	L	S	A	P	T	S	M	G	K	S	A	I	V	D	S	L	L	G	M	.	.	.	.	.	G	T	L	K	R
Query Conservation																																													.	.																										.	.	.	.	.
Alig confidence																													.	.	.														.	.																										.	.	.	.	.
Template Conservation																													.	.	.
Template Sequence		L	Y	S	A	K	S	F	D	E	L	G	L	A	P	E	L	L	K	G	I	Y	A	M	K	F	Q	K	.	.	.	P	S	K	I	Q	E	R	A	L	P	L	L	L	H	N	P	P	R	N	M	I	A	Q	S	Q	S	G	T	G	K	T	A	A	F	S	L	T	M	L	T	R	V	N	P	E	D	A	S	P	Q
Template Known Secondary structure							S					S	S											S	S	S	S		.	.	.			S									S	S			S	S							S	S	T	T																		T	T
Template Predicted Secondary structure																													.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.						.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																.	.	.	.	.																									.	.	.	.	.
Query SS confidence																																.	.	.	.	.																									.	.	.	.	.
Query Sequence		L	V	L	V	V	P	T	V	A	L	A	D	E	T	R	R	R	L	Q	E	R	F	G	D	R	Y	Q	I	I	H	.	.	.	.	.	H	S	S	Q	V	C	H	S	D	Q	A	V	Y	V	L	T	Q	E	R	V	N	E	R	D	.	.	.	.	.	D	I	V	D	I	D	L	F	V	I	D	E	F	Y	K	L
Query Conservation																																.	.	.	.	.																									.	.	.	.	.
Alig confidence																																.	.	.	.	.																									.	.	.	.	.
Template Conservation
Template Sequence		A	I	C	L	A	P	S	R	E	L	A	R	Q	T	L	E	V	V	Q	E	M	G	K	F	T	K	I	T	S	Q	L	I	V	P	D	S	F	E	K	N	K	Q	I	N	A	Q	V	I	V	G	T	P	G	T	V	L	D	L	M	R	R	K	L	M	Q	L	Q	K	I	K	I	F	V	L	D	E	A	D	N	M
Template Known Secondary structure							S	S															S	T	T		S							S	T	T		S			S	S					S						T	T	T							T	T	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	R	Q	L	K	S	G	D	I	D	H	Q	D	E	R	V	I	E	L	N	I	A	L	S	K	L	L	K	V	S	R	Q	F	Y	L	T	G	P	F	V	N	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																				.
Template Conservation		.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		.	.	.	.	.	.	.	.	.	.	L	D	Q	Q	G	L	G	D	Q	C	I	R	V	K	R	F	L	P	K	.	D	T	Q	L	V	L	F	S	A	T	F	A	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.			S	T	T												T	T	T	.	T	S							S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
												245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions