Job Description P52126 Confidence 100.00% Date Wed Jan 25 15:20:57 GMT 2012 Rank 11 Aligned Residues 302 % Identity 15% Template c2eyqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor Resolution 3.20 Å

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		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.							.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.																						.	.
Query SS confidence																				.	.	.	.	.	.																						.	.
Query Sequence		G	Y	V	F	H	S	M	Q	F	H	I	F	D	L	L	K	S	G	.	.	.	.	.	.	Q	N	V	V	L	S	A	P	T	S	M	G	K	S	A	I	V	D	S	L	L	.	.	G	M	G	T	L	K	R	L	V	L	V	V	P	T	V	A	L	A	D	E	T	R	R	R	L	Q	E	R	F	G	D	R	Y
Query Conservation																				.	.	.	.	.	.																						.	.
Alig confidence																				.	.	.	.	.	.																						.	.
Template Conservation
Template Sequence		P	F	E	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	H	K	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P
Template Known Secondary structure			S																			S	S	S												T	T	T													T	T	T								S	S															S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		598	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.														.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	I	H	H	S	S	Q	V	C	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	A	V	Y	V	L	T	Q	E	R	V	N	E	R	D	D	I	V	D	I	D	L	F	V	I	D	E	F	Y	K	L	A	F	R	Q	L	K	S	G	D	I	D	H	Q	D	E	R	V	I	E	L	N	I	A
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	H	K	L	L	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	H	K	E
Template Known Secondary structure								S	T	T	S														T	T			S						T					S					S	S								S	G	G	G	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		678	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.																		.	.	.	.	740
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	K	L	L	K	V	S	R	Q	F	Y	L	T	G	P	F	V	N	S	I	R	G	L	E	K	L	G	Y	P	H	T	F	V	S	T	D	F	N	T	V	A	L	D	V	K	T	F	G	I	K	A	N	D	D	K	A	K	L	K	A	L	G	E	I	A	H	A	C	V	D	A	T	I	I	Y	C	K	S	P
Query Conservation
Alig confidence																																																																				.
Template Conservation																																																																				.
Template Sequence		R	I	K	A	M	R	A	N	V	D	I	L	T	L	T	A	T	P	I	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I	A	T	P	P	A	R	R	L	A	V	K	T	F	V	R	E	Y	D	S	M	V	V	R	E	A	I	L	R	E	I	.	L	R	G	G	Q	V	Y	Y	L	Y	N	D	V
Template Known Secondary structure								T	T	S							S	S											T	T	T	S											B		B																							.	T	T	T										S
Template Predicted Secondary structure																																																																				.
Template SS confidence
		741	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.		.	.	.	810	.	.	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	A	G	L	V	A	R	E	L	I	R	L	G	H	G	T	P	T	E	N	P	H	V	D	W	V	S	E	E	F	D	A	D	W	D	Y	T	V	A	L	R	N	G	I	G	L	H	F	G	A	L	P	R	A	L	Q	Q	Y	T	A	D	Q	F	N	A	G	K	L	R	F	L	L	C	T	S	T	I	I	E
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	I	Q	K	A	A	E	R	L	A	E	L	V	P	E	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	I	G	H	G	Q	M	R	E	R	E	L	E	R	V	M	N	D	F	H	H	Q	R	F	N	V	L	V	C	T	T	I	I	E	T
Template Known Secondary structure		S														T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S															T	T	S							S	S	T	T	G	G
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.																											.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.
		397	.	.	400	.		.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		G	V	N	T	I	.	A	K	N	V	V	I	Y	D	N	R	D	G	T	R	S	I	D	K	F	T	H	G	N	I	K	G	R	A	G	R	M	G	V	H	F	V	G	K	I	F	C	L	E	E	I	P	E	D
Query Conservation							.
Alig confidence							.												.	.	.	.																		.	.
Template Conservation																			.	.	.	.																		.	.
Template Sequence		G	I	D	I	P	T	A	N	T	I	I	I	E	R	A	D	H	.	.	.	.	F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	S	H	.	.	H	Q	A	Y	A	W	L	L	T	P	H	P	K	A
Template Known Secondary structure		G	S			T	T							T	T	T	T	S	.	.	.	.	S										T	T			B	T	T	.	.	B											G	G	G
Template Predicted Secondary structure																			.	.	.	.																		.	.
Template SS confidence
		874	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890					.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.			.	.	910	.	.	.	.	.	.	.	.	.	920	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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