Job Description P52126 Confidence 100.00% Date Wed Jan 25 15:20:57 GMT 2012 Rank 23 Aligned Residues 351 % Identity 18% Template c1s2mA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:putative atp-dependent rna helicase dhh1; PDBTitle: crystal structure of the dead box protein dhh1p Resolution 2.10 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.						.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.
Query Sequence		K	E	F	T	S	L	T	P	D	D	L	R	V	L	E	L	Y	R	T	P	F	S	D	G	Y	V	F	H	S	M	Q	F	H	I	F	D	L	L	K	S	G	Q	N	V	V	L	S	A	P	T	S	M	G	K	S	A	I	V	D	S	L	L	G	.	.	.	.	.	M	G	T	L	K	R	L	V	L	V	V	P
Query Conservation																																																																	.	.	.	.	.
Alig confidence																									.	.	.																																						.	.	.	.	.
Template Conservation																									.	.	.
Template Sequence		N	T	F	E	D	F	Y	L	K	R	E	L	L	M	G	I	F	E	A	G	F	E	K	.	.	.	P	S	P	I	Q	E	E	A	I	P	V	A	I	T	G	R	D	I	L	A	R	A	K	N	G	T	G	K	T	A	A	F	V	I	P	T	L	E	K	V	K	P	K	L	N	K	I	Q	A	L	I	M	V	P
Template Known Secondary structure				G	G	G	G													T	T			S	.	.	.															T									T	T	S																T	T	S		S								S
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180										.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Query Sequence		T	V	A	L	A	D	E	T	R	R	R	L	Q	E	R	F	G	D	R	Y	Q	I	I	H	H	S	S	Q	V	C	H	.	.	.	.	.	.	.	.	.	S	D	Q	A	V	Y	V	L	T	Q	E	R	V	N	E	R	D	.	.	.	.	.	D	I	V	D	I	D	L	F	V	I	D	E	F	Y	K	L	A	F
Query Conservation																																	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.																		.	.	.	.	.																	.	.
Template Conservation																																																																																.	.
Template Sequence		T	R	E	L	A	L	Q	T	S	Q	V	V	R	T	L	G	K	H	C	G	I	S	C	M	V	T	T	G	G	T	N	L	R	D	D	I	L	R	L	N	E	T	V	H	I	L	V	G	T	P	G	R	V	L	D	L	A	S	R	K	V	A	D	L	S	D	C	S	L	F	I	M	D	E	A	D	K	M	.	.
Template Known Secondary structure		S															T	T	T	T	T								S	S	S									T	T	S			S															T	T		S			T	T								S					.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		R	Q	L	K	S	G	D	I	D	H	Q	D	E	R	V	I	E	L	N	I	A	L	S	K	L	L	K	V	S	R	Q	F	Y	L	T	G	P	F	V	N	S	I	R	G	L	E	K	.	.	L	G	Y	P	H	T	F	V	S	T	D	F	N	T	V	A	L	D	V	K	T	F	G	I	K	A	N	D	D	K	A
Query Conservation																																																	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																						.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	L	S	R	D	F	K	T	I	I	E	Q	I	L	S	F	L	P	P	T	H	Q	S	L	L	F	S	A	T	F	P	L	T	V	K	E	F	M	V	K	H	L	H	K	P	Y	E	I	N	L	M	E	E	L	T	L	K	G	I	T	Q	Y	Y	A	F	V	E	E	R	Q	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	S	S												T	T	S		S	S								S															S	S					S			S	S		B		T	T										G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	K	A	L	G	E	I	A	H	A	C	V	D	A	T	I	I	Y	C	K	S	P	T	V	A	G	L	V	A	R	E	L	I	R	L	G	H	G	T	P	T	E	N	P	H	V	D	W	V	S	E	E	F	D	A	D	W	D	Y	T	V	A	L	R	N	G	I	G	L	H	F	G	A	L	P	R	A	L	Q
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	C	L	N	T	L	F	S	K	L	Q	I	N	Q	A	I	I	F	C	N	S	T	N	R	V	E	L	L	A	K	K	I	T	D	L	G	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	Y	Y	S	H	A	R	M	K	Q	Q	E	R
Template Known Secondary structure												S			S							S	S															T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.																													310	.	.	.	.	.	.	.	.	.	320	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	T	A	D	Q	F	N	A	G	K	L	R	F	L	L	C	T	S	T	I	I	E	G	V	N	T	I	A	K	N	V	V	I	Y	D	N	R	D	G	T	R	S	I	D	K	F	T	H	G	N	I	K	G	R	A	G	R	M	G	V	H	F	V	G	K	I	F	C	L	E	E	I	P	E	D	N	L	N	Q
Query Conservation
Alig confidence																																					.	.	.	.																								.	.
Template Conservation																																					.	.	.	.																								.	.
Template Sequence		N	K	V	F	H	E	F	R	Q	G	K	V	R	T	L	V	C	S	D	L	L	T	R	G	I	D	I	Q	A	V	N	V	V	I	N	.	.	.	.	F	D	F	P	K	T	A	E	T	Y	L	H	R	I	G	R	S	G	R	F	G	H	L	.	.	G	L	A	I	N	L	I	N	W	N	D	R	F	N	L	Y
Template Known Secondary structure										T	T	S	S	S					S	S		S	S	S	S				T	T							.	.	.	.	S	S			S	S										B	S	S		T	T			.	.									G	G	G
Template Predicted Secondary structure																																					.	.	.	.																								.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.					.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380			.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	D	I	P	L	G	I	Q	G	I	D	T	P	I	N	L	L	A	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	E	Q	E	L	G	T	E	I	A	A	I	P	A	T	I	D	K	S	L
Template Known Secondary structure								T								S	S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions