Job Description P52126 Confidence 99.96% Date Wed Jan 25 15:20:57 GMT 2012 Rank 49 Aligned Residues 267 % Identity 18% Template c1cu1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:protein (protease/helicase ns3); PDBTitle: crystal structure of an enzyme complex from hepatitis c2 virus Resolution 2.50 Å

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		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	Q	N	V	V	L	S	A	P	T	S	M	G	K	S	A	I	V	D	S	L	L	G	M	G	T	L	K	R	L	V	L	V	V	P	T	V	A	L	A	D	E	T	R	R	R	L	Q	E	R	F	G	D	R	Y	Q	I	I	H	H	S	S	Q	V	C	H	S	D	Q	A	V	Y	V	L	T	Q	E	R	V
Query Conservation
Alig confidence																											.																																			.
Template Conservation																											.																																			.
Template Sequence		S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	Y	A	A	.	Q	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	I	D	P	N	I	R	T	.	G	V	R	T	I	T	T	G	A	P	V	T	Y	S	T	Y	G	K	F
Template Known Secondary structure		S										T	T	S		T	T	T									.	T	T								S																									.	S	S								S
Template Predicted Secondary structure																											.																																			.
Template SS confidence
		1196	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220		.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.		.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.
		194	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		N	E	R	D	.	.	D	I	V	D	I	D	L	F	V	I	D	E	F	Y	K	L	A	F	R	Q	L	K	S	G	D	I	D	H	Q	D	E	R	V	I	E	L	N	I	A	L	S	K	L	L	K	V	S	R	Q	F	Y	L	T	G	P	F	V	N	S	I	R	G	L	E	K	L	G	Y	P	H	T	F	V	S
Query Conservation						.	.
Alig confidence						.	.																																	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Sequence		L	A	D	G	G	C	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	S	T	T	I	L	G	I	G	T	V	L	D	Q	A	E	.	.	.	.	.	.	.	.	.	.	.	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	G	.	.	.	.	.	S	V	T	V	P	H	P	N	I	E
Template Known Secondary structure				T	T	S			T	T	S		S					T	T	T	T			S														T	T	.	.	.	.	.	.	.	.	.	.	.	T	T	T		S							S	S		T	T	.	.	.	.	.							T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template SS confidence
		1274	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.												.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.						.	.	1330	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	F	N	T	V	A	L	D	V	K	T	F	G	I	K	A	N	D	D	K	A	K	L	K	A	L	G	E	I	A	H	A	C	V	D	A	T	I	I	Y	C	K	S	P	T	V	A	G	L	V	A	R	E	L	I	R	L	G	H	G	T	P	T	E	N	P	H	V	D	W	V	S	E	E	F	D	A	D	W
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	A	L	S	N	T	G	E	I	P	F	Y	G	K	A	I	P	I	E	A	I	.	.	.	.	.	.	.	.	.	.	.	R	G	G	R	H	L	I	F	C	H	S	K	K	K	C	D	E	L	A	A	K	L	S	G	L	G	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S		S	S				T	T					G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	S	S	S							S	S														T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1338	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.												1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.									.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.
Query Sequence		D	Y	T	V	A	L	R	N	G	I	G	L	H	F	G	A	L	P	R	A	L	Q	Q	Y	T	A	D	Q	F	N	A	G	K	L	R	F	L	L	C	T	S	T	I	I	E	G	V	N	T	I	A	K	N	V	V	.	.	.	.	.	.	.	.	I	Y	D	N	R	D	G	T	R	.	.	.	.	.	.	.	.
Query Conservation																																																									.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	A	V	A	Y	Y	R	G	L	D	V	S	V	I	.	.	.	.	.	.	.	P	T	I	G	D	V	V	V	V	A	T	D	A	L	M	T	G	Y	T	G	D	F	D	S	V	I	D	C	N	T	C	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.						T	T	S		G	G	G	S	.	.	.	.	.	.	.		S	S	S	S							T	T										S																		S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template SS confidence
											1388	.	1390	.	.	.	.	.	.	.	.	.	1400								.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	D	K	F	T	H	G	N	I	K	G	R	A	G	R	M	G	V	H	F	V	G	K	I	F	C	L	E	E	I	P
Query Conservation
Alig confidence																					.	.	.
Template Conservation																					.	.	.
Template Sequence		P	Q	D	A	V	S	R	S	Q	R	R	G	R	T	G	R	G	R	R	.	.	.	G	I	Y	R	F	V	T	P	G	E
Template Known Secondary structure				B									T	T	S		S	S	S		.	.	.						S
Template Predicted Secondary structure																					.	.	.
Template SS confidence
		1452	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470				.	.	.	.	.	.	.	.	.	1480

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions