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Job DescriptionP52126
Confidence100.00%DateWed Jan 25 15:20:57 GMT 2012
Rank40Aligned Residues271
% Identity18%Templatec1a1vA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   114.....120.........130.........140.........150.........160.........170.........180.........190...
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Query Sequence  SGQNVVLSAPTSMGKSAIVDSLLGMGTLKRLVLVVPTVALADETRRRLQERFGDRYQIIHHSSQVCHSDQAVYVLTQERV
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Template Sequence  SFQVAHLHAPTGSGKSTKVPAAYAAQ. GYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRT. GVRTITTGSPITYSTYGKF
Template Known Secondary structure  S


TTS
TTTTT.T

S
S



.SS




S
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   196...200.........210.........220. ........230.........240.........250.... .....260.........270...
 
   194.....200.........210.........220.........230.........240.........250.........260.........270..
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Query Sequence  . NERDDIVDIDLFVIDEFYKLAFRQLKSGDIDHQDERVIELNIALSKLLKVSRQFYLTGPFVNSIRGLEKLGYPHTFVST
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Template Sequence  LADGGSGGAYDIIICDECHSTD. . . . . . . . . . . ATSILGIGTVLDQAETAGARLVVLATATPPG. . . . . SVTVPHPNIEE
Template Known Secondary structure  TT





STTT

S...........TTTTT
SSS
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TT
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   274.....280.........290..... ....300.........310.........320...... ...330.......
 
   273......280.........290.........300.........310.........320.........330.........340.........350..
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Query Sequence  DFNTVALDVKTFGIKANDDKAKLKALGEIAHACVDATIIYCKSPTVAGLVARELIRLGHGTPTENPHVDWVSEEFDADWD
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Template Sequence  VALSTTGEIPFYGKAIPLEVIK. . . . . . . . . . . GGRHLIFCHSKKKCDELAAKLVALGIN. . . . . . . . . . . . . . . . . . . .
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S
SSTT
T...........SS
SSTT

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   339340.........350.........360 .........370.........380.......
 
   353......360.........370.........380 .........390.........400.........410.........420.....
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Query Sequence  YTVALRNGIGLHFGALPRALQQYTADQF. . . . . . . NAGKLRFLLCTSTIIEGVNTIAKNVVIYDNRDGTRSIDKFTHGNI
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Template Sequence  . . . . . . . . AVAYYRGLDVSVIPTSGDVVVVATDALFTGDFDSVIDCNTVTQTVDFSLDPTFTIE. . TTTLPQDAVSRTQR
Template Known Secondary structure  ........
TTS
GGGS
SSSS
TT




BS






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   388.390.........400.........410.........420.........430.........440... ......450.......
 
   426...430.........440......
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Query Sequence  KGRAGRMGVHFVGKIFCLEEI
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Template Sequence  RGRTGRGKP. . . GIYRFVAPG
Template Known Secondary structure  TTB
SSS
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S
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   462.......470 .........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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