 |
Job Description | P0ABQ0 | Confidence | 96.65% | Date | Wed Jan 25 15:20:22 GMT 2012 |
Rank | 100 | Aligned Residues | 79 |
% Identity | 18% | Template | c3toxG_ |
PDB info |
PDB header:oxidoreductase | Chain: G: PDB Molecule:short chain dehydrogenase; |
PDBTitle: crystal structure of a short chain dehydrogenase in complex with2 nad(p) from sinorhizobium meliloti 1021
|
Resolution | 1.93 Å |
|
 |
  |   |
186 | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
240 | . | . | . | . | . | . | . | . | . | 250 | . | . | |
|
|
|
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |
| . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
Query Sequence |   |
L | K | H | L | N | I | M | I | T | A | G | P | T | R | E | P | L | D | P | V | R | Y | I | S | N | H | S | S | G | K | M | G | F | A | I | A | A | A | A | A | R | R | G | A | N | V | T | L | V | S | G | P | V | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
L | P | T | P | P | F | V | K | R | V | D | V | M | . |
. |
. |
. |
Query Conservation |   |
|   |
|
|   |
|
|
|
|
|
|   |
|   |
|   |
|
|   |
|
|   |
|
|
|   |
|
|
|
|   |
|   |   |
|
|   |   |   |   |   |   |
|
|   |
|   |
|
|   |
|   |   |   | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |   |   |   |
|   |
|   | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
Template Conservation |   |
|   |
|
|   |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |
| . |
|
|   |
|
|
|   |   |
|   |   |   |
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
Template Sequence |   |
L | E | G | K | I | A | I | V | T | G | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | S | G | . |
I | G | R | A | A | A | L | L | F | A | R | E | G | A | K | V | V | V | T | A | R | N | G | N | A | L | A | E | L | T | D | E | I | A | G | G | G | G | E | A | A | A | L | A | G | D | V | G | D | E |
Template Known Secondary structure |   |
T | T | T |
|  |  |  |  | S | S | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | T | S |  | . |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |  |  |  |
|
| T | T |
|  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | |
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . |
  |
  |   |
|
253 | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 |
Predicted Secondary structure |   |
. |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
T | A | L | E | M | E | A | A | V | N | A | S | V | Q | Q | Q | N | I | F | I | G | C | A | A | V | A | D | Y |
Query Conservation |   |
. |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |
|
|
|
|
|
|
|
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | L | H | E | A | L | V | E | L | A | V | R | R | F | G | G | L | D | T | A | F | N | N | A | G | A | L | G | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |
|
|  |  |  |  |
|
|
|
|
|
| S |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|