Job Description P0ABQ0 Confidence 98.15% Date Wed Jan 25 15:20:22 GMT 2012 Rank 16 Aligned Residues 273 % Identity 17% Template c2et6A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:(3r)-hydroxyacyl-coa dehydrogenase; PDBTitle: (3r)-hydroxyacyl-coa dehydrogenase domain of candida tropicalis2 peroxisomal multifunctional enzyme type 2 Resolution 2.22 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	L	A	G	K	K	I	V	L	G	V	S	G	G	I	A	A	Y	K	T	P	E	L	V	R	R	L	R	D	R	G	A	D	V	R	V	A	M	T	E	A	A	K	A	F	I	T	P	L	S	L	Q	A	V	S	G	Y	P	V	S	D	S	L	L	D	P	A	A	E	A	A	M	G	H	I	E	L	G	K
Query Conservation
Alig confidence											.	.									.																		.
Template Conservation											.	.									.																		.
Template Sequence		V	D	F	K	D	K	V	V	I	.	.	I	T	G	A	G	G	G	L	.	G	K	Y	Y	S	L	E	F	A	K	L	G	A	K	V	V	V	.	N	D	L	K	A	A	D	V	V	V	D	E	I	V	K	N	G	G	V	A	V	A	D	Y	N	N	V	L	D	G	D	K	I	V	E	T	A	V	K	N	F	G
Template Known Secondary structure					T	T					.	.		T	T	T	T	S			.											T	T						.																T	T										T	T														S
Template Predicted Secondary structure											.	.									.																		.
Template SS confidence
		4	.	.	.	.	.	10	.	.			.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.								.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.										.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query Sequence		W	A	D	L	V	I	.	.	.	.	.	.	.	L	A	P	A	T	A	D	L	I	A	R	V	A	A	G	M	A	N	D	L	V	S	T	I	C	L	A	T	.	.	.	.	.	.	.	.	.	P	A	P	V	A	V	L	P	A	M	N	Q	Q	M	Y	R	A	A	A	T	.	.	.	.	.	.	.	.	.	.
Query Conservation								.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	H	V	I	I	N	N	A	G	I	L	R	D	A	S	M	K	K	M	T	E	K	D	Y	K	L	V	I	D	V	H	L	N	G	A	F	A	V	T	K	A	A	W	P	Y	F	Q	K	Q	K	Y	G	R	I	V	N	T	S	S	P	A	G	L	Y	G	N	F	G	Q	A	N	Y	A	S	A	K	S	A	L
Template Known Secondary structure																B		T	T	T														T																		T																	T	T	B
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
					135	.	.	.	.	140		.	.	.	.	.			.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure		.	.	.							.						.	.												.	.	.																																									.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.							.						.	.												.	.	.																																									.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	Q	H	N	L	E	V	.	L	A	S	R	G	.	.	L	L	I	W	G	P	D	S	G	S	Q	.	.	.	A	C	G	D	I	G	P	G	R	M	L	D	P	L	T	I	V	D	M	A	V	A	H	F	S	P	V	N	D	L	K	H	L	N	I	M	I	T	A	G	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.							.						.	.												.	.	.																																									.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.							.						.	.												.	.	.																																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	F	A	E	T	L	A	K	E	G	A	K	Y	N	I	K	A	N	A	I	A	P	L	A	R	S	R	M	T	E	S	I	M	P	P	P	M	L	E	K	L	G	P	E	K	V	A	P	L	V	L	Y	L	S	S	A	E	N	E	L	T	G	Q	F	F	E	V	A	A	G	F	Y	A	Q	I	R	W	E	R
Template Known Secondary structure													G	G	G	T																	T	T	S						T	T		S												T	S	S	S					S							T	T
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
																																																																			197	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	R	E	P	L	D	P	V	R	Y	I	S	N	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	G	V	L	F	K	P	D	Q	S	F	T	A	E	V	V	A	K	R	F	S	E	I	L	D	Y	D	D	S	R	K	P	E	Y	L	K	N	Q	Y	P	F	M	L	N	D	Y	A	T	L	T	N	E	A	R	K	L	P	A	N	D	A	S	G	A	P	T	V	S	L	K	D	K	V	V	L	I	T	G	A
Template Known Secondary structure									S	S	T	T														T					T	T	S		G	G	G	S		B			S	S	S											T	T	S						T	T							T	T						S	S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.															.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	S	G	K	M	G	F	A	I	A	A	A	A	A	R	R	G	A	N	V	T	L	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	V	S	L	P	T	P	P	F	V	K	R	V	D	V	M	T	A	L	E	M	E	A	A	V	N	A	S	V	Q	Q	Q	N	I	F	I	G	C	A	A	V
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation					.																																															.	.	.	.
Template Sequence		G	A	G	.	L	G	K	E	Y	A	K	W	F	A	K	Y	G	A	K	V	V	V	N	D	F	K	D	A	T	K	T	V	D	E	I	K	A	A	G	G	E	A	W	P	D	Q	H	D	V	A	.	.	.	.	K	D	S	E	A	I	I	K	N	V	I	D	K	Y	G	T	I	D	I	L	V	N	N	A	G	I
Template Known Secondary structure		S	S		.												T	T								S	S												T	T												.	.	.	.															S
Template Predicted Secondary structure					.																																															.	.	.	.
Template SS confidence
		331	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.					380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		278	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	Y	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	D	R	S
Template Known Secondary structure					B
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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