Job Description P03004 Confidence 97.77% Date Thu Jan 5 10:57:49 GMT 2012 Rank 142 Aligned Residues 231 % Identity 16% Template c3qmzA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:cytoplasmic dynein heavy chain; PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain Resolution 6.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		K	H	T	F	D	N	F	V	E	G	K	S	N	Q	L	A	R	A	A	A	R	Q	V	A	D	N	P	G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V	Y	.	M	H	S	E	R	F	V	Q	D	M	V	K	A
Query Conservation																																																																				.
Alig confidence																																						.																														.
Template Conservation																																						.
Template Sequence		K	F	Y	L	N	S	V	F	I	S	Q	S	G	Y	L	L	L	I	G	F	A	T	L	T	D	S	L	H	Q	K	Y	G	G	C	F	F	.	G	P	A	G	T	G	K	T	E	T	V	K	A	F	G	Q	N	L	G	R	V	V	V	V	F	N	C	D	D	S	F	D	Y	Q	V	L	S	R	L	L	V	G	I
Template Known Secondary structure										S	S																			T	T	T	T					.			T	T	S	S									T	S	S											S	S	S	S		S
Template Predicted Secondary structure																																						.
Template SS confidence
		1733	.	.	.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.	.	.	.	.	.	1760	.	.	.	.	.	.	.	.		.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.							.	.	280	.	.	.	.	.
Predicted Secondary structure																																.	.																																			.	.	.	.	.	.
Query SS confidence																																.	.																																			.	.	.	.	.	.
Query Sequence		L	Q	N	N	A	I	E	E	F	K	R	Y	Y	R	S	V	D	A	L	L	I	D	D	I	Q	F	F	A	N	K	.	.	E	R	S	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R	Y	P	K	E	I	N	G	.	.	.	.	.	.	V	E	D	R	L	K	S	R
Query Conservation																																.	.																																			.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.													.	.																																			.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Q	I	G	A	W	.	.	.	.	.	.	.	.	.	.	.	.	G	C	F	D	E	F	N	R	L	D	E	K	V	L	S	A	V	S	A	N	I	Q	Q	I	Q	N	G	L	Q	V	G	K	S	H	I	T	L	L	E	E	E	T	P	L	S	P	H	T	A	V	F	I	T	L	L	P	E	N	L	K	K	S
Template Known Secondary structure			T	T				.	.	.	.	.	.	.	.	.	.	.	.					T	T	T	T	S	S																	T	S	T	T	S	S	S						S	S																					T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1839	1840	.	.	.	.													.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.														.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	G	W	G	L	T	V	A	I	E	P	P	E	L	E	T	R	V	A	I	L	M	K	K	A	D	E	N	D	I	R	L	P	G	E	V	A	F	F	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	L	R	S	N	V	R	E	L	E	G	A	L	N	R	V	I	A	N	A	N	F	T	G	R
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.					.						.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.					.						.	.	.
Template Sequence		F	R	.	.	.	E	F	S	M	.	K	S	Q	S	G	.	.	.	T	I	A	E	M	I	L	Q	I	M	G	F	E	D	S	K	S	L	A	S	K	I	V	H	F	L	E	L	L	S	S	K	C	S	S	M	N	H	Y	H	F	G	L	R	T	L	K	G	V	L	R	N	C	S	P	L	I	S	E	F	G	E
Template Known Secondary structure		T		.	.	.					.						.	.	.												T	S	S																					S	S	S																							S	S
Template Predicted Secondary structure				.	.	.					.						.	.	.
Template SS confidence
		1916	.				.	.	1920	.		.	.	.	.	.				.	.	.	1930	.	.	.	.	.	.	.	.	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.	.	.	.	.	.	.	.	1970	.	.	.	.	.	.	.	.	.	1980	.	.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	T	I	D	F	V	R	E	A	L	R	D	L	L	A	L	Q	E	K	L	V	T	I	D	N	I	Q	K	T	V	A	E	Y	Y
Query Conservation
Alig confidence			.	.
Template Conservation			.	.
Template Sequence		G	.	.	E	K	T	V	V	E	S	L	K	R	V	I	L	P	S	L	G	D	T	D	E	L	V	F	K	D	E	L	S	K	S	K
Template Known Secondary structure		S	.	.	S													S	S	S	S	T	T
Template Predicted Secondary structure			.	.
Template SS confidence
		1990			.	.	.	.	.	.	.	.	.	2000	.	.	.	.	.	.	.	.	.	2010	.	.	.	.	.	.	.	.	.	2020	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions