Job Description P03004 Confidence 99.59% Date Thu Jan 5 10:57:49 GMT 2012 Rank 79 Aligned Residues 224 % Identity 16% Template c3pxgA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:negative regulator of genetic competence clpc/mecb; PDBTitle: structure of meca121 and clpc1-485 complex Resolution 3.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V	Y	M	H	S	E	R	F	V	Q	D	M	V	K	A	L	Q	N	N	A	I	E	E	F	K	R	Y	Y	R	S	V	D	.	A	L	L	I	D	D	I	Q	F	F	A
Query Conservation																																																																						.
Alig confidence																																			.	.	.	.	.	.	.	.																												.
Template Conservation																																			.	.	.	.	.	.	.	.
Template Sequence		R	T	K	N	N	P	V	L	I	G	E	P	G	V	G	K	T	A	I	A	E	G	L	A	Q	Q	I	I	N	N	E	V	P	.	.	.	.	.	.	.	.	E	I	L	R	D	K	R	V	M	T	L	E	D	R	L	K	K	V	M	D	E	I	R	Q	A	G	N	I	I	L	F	I	D	A	K	P	S	L	A
Template Known Secondary structure		S	S	S							S		T	T	T	T	T													S	S		S		.	.	.	.	.	.	.	.	T	T	T	S	S								T	T										T														T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.									.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.					.	.
Predicted Secondary structure																																									.	.																																		.	.	.	.
Query SS confidence																																									.	.																																		.	.	.	.
Query Sequence		N	K	E	R	S	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R	Y	P	K	E	I	N	G	V	E	D	.	.	R	L	K	S	R	F	G	W	G	L	T	V	A	I	E	P	P	E	L	E	T	R	V	A	I	L	M	K	K	A	D	E	N	.	.	.	.	D	I
Query Conservation																																									.	.																																		.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.								.	.	.																								.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template Sequence		R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	L	Q	C	I	G	A	T	T	L	D	E	Y	R	K	Y	I	E	K	D	A	A	L	E	R	R	F	Q	.	.	.	P	I	Q	V	D	Q	P	S	V	D	E	S	I	Q	I	L	Q	G	L	R	D	R	Y	E	A	H	H	R	V
Template Known Secondary structure		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S									T	T	T	T					T	T		S					S			.	.	.																			T	T	T	T	S	G	G	G	S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template SS confidence
		306																			.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.				.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.							.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.			.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.											.	.
Predicted Secondary structure																					.	.	.	.	.	.																				.	.																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.																				.	.																							.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	P	G	E	V	A	F	F	I	A	K	R	L	R	S	N	V	R	.	.	.	.	.	.	E	L	E	G	A	L	N	R	V	I	A	N	A	N	F	T	G	R	A	.	.	I	T	I	D	F	V	R	E	A	L	R	D	L	L	A	L	Q	E	K	L	V	T	.	.	.	.	.	.	.	.	.	.	I	D
Query Conservation																					.	.	.	.	.	.																				.	.																							.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.																				.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	I	T	D	D	A	I	E	A	A	V	K	L	S	D	R	Y	I	S	D	R	F	L	P	D	K	A	I	D	L	I	D	E	A	G	S	K	V	R	L	R	S	F	T	T	P	P	N	L	K	E	L	E	Q	K	L	D	E	V	R	K	E	K	D	A	A	V	Q	S	Q	E	F	E	K	A	A	S	L	R	D
Template Known Secondary structure		S																S	S			S		T	T																		T	T	S			S	S	T																							S
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	Q	K	T	V	A	E	Y	Y	K	I	K	V	A	D	L	L	S	K	R	R	S	R	S	V	A	R	P	R	Q	M	A	M	A	L	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	Q	R	L	R	E	Q	V	E	D	T	K	K	S	W	K	E	K	Q	G	Q	E	N	S	E	V	T	V	D	D	I	A	M	V	V	S	S
Template Known Secondary structure															S	G	G	G							T	T				T									T
Template Predicted Secondary structure
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions