Return to main results Retrieve Phyre Job Id

Job DescriptionP03004
Confidence96.80%DateThu Jan 5 10:57:49 GMT 2012
Rank314Aligned Residues114
% Identity11%Templatec3llmB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:atp-dependent rna helicase a; PDBTitle: crystal structure analysis of a rna helicase
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   165....170.........180.........190....... ..200.........210.....
Predicted Secondary structure 














....
.........................
Query SS confidence 
































. . . .

















. . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  YNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAK. . . . VVYMHSERFVQDMVKALQ. . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation     


 
  
 


 

 


           ....                  .........................
Alig confidence 
































....

















.........................
Template Conservation     


 
 





      

             
    
    
                                 
Template Sequence  NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPH
Template Known Secondary structure 
S

TTSSTT
GGG
SSTTT

TTSSTT


SS
Template Predicted Secondary structure 































Template SS confidence 















































































   404.....410.........420.........430.........440.........450.........460.........470.........480...
 
   216...220.........230.........240.........250.........260.........270........
Predicted Secondary structure  ........


















Query SS confidence  . . . . . . . .






























































Query Sequence  . . . . . . . . NNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGV
Query Conservation  ........      
        

 



  
      
  
             


     
     
Alig confidence  ........






























































Template Conservation    
   
   
   
   
  
  




 
 
      

  

         



 


         
Template Sequence  ASIXFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLXSATIDTSXFCEY
Template Known Secondary structure  S

TT



TTS


TTSSSS

Template Predicted Secondary structure 


















Template SS confidence 






































































   484.....490.........500.........510.........520.........530.........540.........550....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions