Job Description P03004 Confidence 97.60% Date Thu Jan 5 10:57:49 GMT 2012 Rank 169 Aligned Residues 175 % Identity 15% Template c3l9oA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome Resolution 3.39 Å

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		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	T	Q	T	P	Q	A	A	V	T	S	N	V	A	A	P	A	Q	V	A	Q	T	Q	P	Q	R	A	A	P	S	T	R	S	G	W	D	N	V	P	A	P	A	E	P	T	Y	R	S	N	V	N	V	K	H	T	F	D	N	F	V	E	G	K	S	N	Q	L	A	R	A	A	A	R	Q	V	A	D	N	P
Query Conservation
Alig confidence																																																														.	.	.	.	.										.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.										.	.	.	.	.	.
Template Sequence		D	A	S	K	G	L	T	N	S	E	T	L	Q	V	E	Q	D	G	K	V	R	L	S	H	Q	V	R	H	Q	V	A	L	P	P	N	Y	D	Y	T	P	I	A	E	H	K	R	V	N	E	A	R	T	Y	P	F	T	L	D	P	F	.	.	.	.	.	Q	D	T	A	I	S	C	I	D	.	.	.	.	.	.
Template Known Secondary structure								S	S	S		S	S	S	S			S	S		S													S	S				S	S	T	T	T	T	T				S		S	S			S	S						.	.	.	.	.									T	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.										.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																									.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V	Y	.	M	H	S	E	R	F	V	Q	D	M	V	K	A	L	Q	N	N	A	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																									.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																														.	.							.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																														.	.
Template Sequence		.	.	R	G	E	S	V	L	V	S	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	Q	S	L	K	N	.	.	K	Q	R	V	I	Y	T	S	P	I	K	A	L	S	N	Q	K	Y	R	E	L	L	A	E	F	G	D	V	G	L	M	T	G	D	I	T	I	N	P	D	A	G	C	L	V	M	T
Template Known Secondary structure		.	.	T	T									S	S	S																T	.	.	T								S	S															T	S	S						S	S		B				S		S
Template Predicted Secondary structure		.	.																														.	.
Template SS confidence
				163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
											221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	E	F	K	R	Y	Y	R	S	V	D	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R	Y	P	K
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																						.	.
Template Conservation																																.	.
Template Sequence		T	E	I	L	R	S	M	L	Y	R	G	S	E	V	M	R	E	V	A	W	V	I	F	D	E	V	H	Y	M	R	.	.	D	K	E	R	G	V	V	W	E	E	T	I	I	L	L	P	D	K	V	R	Y	V	F	L	S	A	T	I	P	N
Template Known Secondary structure													S	S												T	G	G	G	T	T	.	.	S														S		T	T	S								S		S	S
Template Predicted Secondary structure																																.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.			.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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