Job Description P03004 Confidence 99.89% Date Thu Jan 5 10:57:49 GMT 2012 Rank 21 Aligned Residues 244 % Identity 15% Template c3eihB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 4; PDBTitle: crystal structure of s.cerevisiae vps4 in the presence of atpgammas Resolution 3.25 Å

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.								.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.
Query Sequence		N	V	K	H	T	F	D	N	F	V	E	G	K	S	N	Q	L	A	R	A	A	A	R	.	.	.	.	.	.	.	Q	V	A	D	N	P	G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V	Y	M	H	S	E	R
Query Conservation																									.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.																																			.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.
Template Sequence		K	P	N	V	K	W	E	D	V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	V	K	F	P	H	L	F	K	G	N	R	K	P	T	S	G	I	L	L	Y	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	.	.	.	N	S	T	F	F	S	V	S	S	S	D
Template Known Secondary structure							S	T	T	S		S													T						G	G	G			T	T												S	T	T	S												T	T	.	.	.	.	.	T
Template Predicted Secondary structure																																																																		.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190						.	.	.	.	.	.	.	.	.	200	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.										.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																									.																			.	.	.	.	.	.	.	.	.																			.
Query SS confidence																									.																			.	.	.	.	.	.	.	.	.																			.
Query Sequence		F	V	Q	D	M	V	K	A	L	Q	N	N	A	I	E	E	F	K	R	Y	Y	R	S	.	V	D	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	.	.	.	.	.	.	.	.	.	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	Q	I	.	I	L	T	S	D	R	Y	P	K	E
Query Conservation																									.																			.	.	.	.	.	.	.	.	.																			.
Alig confidence																									.																			.	.	.	.	.	.	.	.	.																			.
Template Conservation
Template Sequence		L	V	S	K	W	M	G	E	S	E	K	L	V	K	Q	L	F	A	M	A	R	E	N	K	P	S	I	I	F	I	D	Q	V	D	A	L	T	G	T	R	G	E	G	E	S	E	A	S	R	R	I	K	T	E	L	L	V	Q	M	N	G	V	G	N	D	S	Q	G	V	L	V	L	G	A	T	N	I	P	W	Q
Template Known Secondary structure			T	T	T	S	S	S	S		T	T	T										T	T	S	S							S	G	G	G	G					S	S	S	S	S	S	S	S	S	T	T								T	T	S	T	T	T	T	S		S								S			T	T
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.																		.	.	.	.	.
Query SS confidence																																																											.																		.	.	.	.	.
Query Sequence		I	N	G	V	E	D	R	L	K	S	R	F	G	W	G	L	T	V	A	I	E	P	P	E	L	E	T	R	V	A	I	L	M	K	K	A	D	E	N	D	I	R	L	P	G	E	V	A	F	F	I	A	K	R	L	R	S	.	N	V	R	E	L	E	G	A	L	N	R	V	I	A	N	A	N	.	.	.	.	.
Query Conservation																																																											.																		.	.	.	.	.
Alig confidence		.	.	.												.	.																																										.																		.	.	.	.	.
Template Conservation		.	.	.												.	.
Template Sequence		.	.	.	L	D	S	A	I	R	R	R	F	E	R	.	.	R	I	Y	I	P	L	P	D	L	A	A	R	T	T	M	F	E	I	N	V	G	D	T	P	C	V	L	T	K	E	D	Y	R	T	L	G	A	M	T	E	G	Y	S	G	S	D	I	A	V	V	V	K	D	A	L	M	Q	P	I	R	K	I	Q	S
Template Known Secondary structure		.	.	.	S											.	.																					T	T	S															T		T	T															T
Template Predicted Secondary structure		.	.	.												.	.
Template SS confidence
					282	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
																																									349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	G	R	A	I	T	I	D	F	V	R	E	A	L	R	D	L	L	A	L	Q	E	K	L	V	T	I	D	N	I	Q	K	T	V	A	E	Y	Y	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.								.
Template Conservation																																																																		.								.
Template Sequence		A	T	H	F	K	D	V	S	T	E	D	D	E	T	R	K	L	T	P	C	S	P	G	D	D	G	A	I	E	M	S	W	T	D	I	E	A	D	E	L	K	E	P	D	L	T	I	K	D	F	L	K	A	I	K	S	T	R	P	T	V	N	E	D	.	D	L	L	K	Q	E	Q	.	F	T	R	D	F	G
Template Known Secondary structure											T	T		S	S								S	S	S	T	T			B			S	T	T	S		G	G	G	B																				S	S		S	G	.	G	G						.				T	T	S
Template Predicted Secondary structure																																																																		.								.
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.		.	.	430	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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