Job Description P03004 Confidence 99.78% Date Thu Jan 5 10:57:49 GMT 2012 Rank 49 Aligned Residues 199 % Identity 19% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

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		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																											.	.																																		.	.	.	.
Query SS confidence																																											.	.																																		.	.	.	.
Query Sequence		A	R	A	A	A	R	Q	V	A	D	N	P	G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	.	.	A	R	K	P	N	A	K	V	V	Y	M	H	S	E	R	F	V	Q	D	M	V	K	A	L	Q	N	N	A	I	E	E	F	K	.	.	.	.
Query Conservation																																											.	.																																		.	.	.	.
Alig confidence																																											.	.																																		.	.	.	.
Template Conservation
Template Sequence		K	I	L	E	I	K	R	L	I	P	K	I	A	K	S	K	A	P	V	L	I	T	G	E	S	G	T	G	K	E	I	V	A	R	L	I	H	R	Y	S	G	R	K	G	A	F	V	D	L	N	C	A	S	I	P	Q	E	L	A	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	L	T	R	K	K	G
Template Known Secondary structure															T	S		S								T	T	S	S																S							S	S	S	S		T	T	T										S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
			224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.											.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																		.	.	.	.	.	.	.	.	.	.																						.	.	.
Query SS confidence		.																																		.	.	.	.	.	.	.	.	.	.																						.	.	.
Query Sequence		.	R	Y	Y	R	S	V	D	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	Q	E	E	F	F	H	T	F	N	A	.	.	.	.	.	.	.	.	.	.	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R	Y	P	K	E	I	N	G	.	.	.	V	E	D	R	L	K	S	R	F	G	W	G
Query Conservation		.																																		.	.	.	.	.	.	.	.	.	.																						.	.	.
Alig confidence		.																			.	.														.	.	.	.	.	.	.	.	.	.																						.	.	.											.	.
Template Conservation																					.	.																																																										.	.
Template Sequence		K	L	E	L	A	D	Q	G	T	L	F	L	D	E	V	G	E	L	D	.	.	Q	R	V	Q	A	K	L	L	R	V	L	E	T	G	S	F	T	R	L	G	G	N	Q	K	I	E	V	D	I	R	V	I	S	A	T	N	K	N	L	E	E	E	I	K	K	G	N	F	R	E	D	L	Y	Y	R	L	S	.	.
Template Known Secondary structure						T	T	T	S						T	G	G	G	S		.	.														S					B	T																S	S								T	T	S	S									T	.	.
Template Predicted Secondary structure																					.	.																																																										.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.									.	.	.	.	.	310	.	.	.	.	.				.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.												.	.	.											.
Query SS confidence																	.	.	.	.	.	.	.	.												.	.	.											.
Query Sequence		L	T	V	A	I	E	P	P	E	L	E	T	R	V	A	.	.	.	.	.	.	.	.	I	L	M	K	K	A	D	E	N	D	I	.	.	.	R	L	P	G	E	V	A	F	F	I	.	A	K	R	L	R	S	N	V	R	E	L	E	G	A	L	N	R	V	I	A	N	A	N	F	T	G	R	A	I	T
Query Conservation																	.	.	.	.	.	.	.	.												.	.	.											.
Alig confidence		.															.	.	.	.	.	.	.	.												.	.	.											.																								.	.
Template Conservation		.																																																																							.	.
Template Sequence		.	V	F	Q	I	Y	L	P	P	L	R	E	R	G	K	D	V	I	L	L	A	E	Y	F	L	K	K	F	A	K	E	Y	K	K	N	C	F	E	L	S	E	E	T	K	E	Y	L	X	K	Q	E	W	K	G	N	V	R	E	L	K	N	L	I	E	R	A	V	I	L	C	E	.	.	G	E	V	I	K
Template Known Secondary structure		.	S								G	G	G	S	T	T																	T	T						B										T				T	T															T			.	.	S	S	B
Template Predicted Secondary structure		.																																																																							.	.
Template SS confidence
			294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.			.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions