Job Description P03004 Confidence 97.12% Date Thu Jan 5 10:57:49 GMT 2012 Rank 252 Aligned Residues 131 % Identity 15% Template c3crqA_ PDB info PDB header:transferase Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V	Y	M	H	S	E	R	F	V	Q	D	M	V	K	A	L	Q	N	N	A	I	E	E	F	K	R	Y	Y	R	S	V	D	A	L	L	I	D	D	I	Q	F	F	A	N	.	.	K	E	R
Query Conservation																																																																													.	.
Alig confidence																								.	.	.	.	.										.	.	.	.																																				.	.
Template Conservation																								.	.	.	.	.										.	.	.	.
Template Sequence		I	F	L	M	G	P	T	A	A	G	K	T	D	L	A	M	A	L	A	D	A	L	.	.	.	.	.	P	C	E	L	I	S	V	D	S	.	.	.	.	A	L	I	Y	R	G	M	D	I	G	T	A	K	P	S	R	E	L	L	A	R	Y	P	H	R	L	I	D	I	R	D	P	A	E	S	Y	S	A	A	E
Template Known Secondary structure							S	T	T	S	S										T	T	S	.	.	.	.	.									T	.	.	.	.	T	T	T	B	T	T			T	T	T	T										S				S	S	S		B		T	T	S
Template Predicted Secondary structure																								.	.	.	.	.										.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.						30	.	.	.	.	.	.	.	.					.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		S	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R	Y	P	K	E	I	N	G	V	E	D	R	L	K	S	R	F	G	W	G	L	T	.	V	A	I	E	P	P	E	L	E	T	R	V	A	I	L	M	K	K	A	D	E
Query Conservation																																																.
Alig confidence																											.	.	.	.	.																	.
Template Conservation																											.	.	.	.	.
Template Sequence		F	R	A	D	A	L	A	A	M	A	K	A	T	A	R	G	R	I	P	L	L	V	G	G	T	.	.	.	.	.	M	L	Y	Y	K	A	L	L	E	G	L	P	Y	T	V	A	Q	L	A	I	A	P	E	Q	R	Q	V	L	H	A	R	I	A	Q	R	F	R	Q
Template Known Secondary structure																T	T								S		.	.	.	.	.													S										S	S
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.						.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions