Job Description P03004 Confidence 99.24% Date Thu Jan 5 10:57:49 GMT 2012 Rank 93 Aligned Residues 129 % Identity 12% Template c3co5B_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative two-component system transcriptional response PDBTitle: crystal structure of sigma-54 interaction domain of putative2 transcriptional response regulator from neisseria gonorrhoeae Resolution 2.40 Å

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		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	A	A	A	R	Q	V	A	D	N	P	G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V	Y	M	H	S	E	R	F	V	Q	D	M	V	K	A	L	Q	N	N	A	I	E	E	F	K	R	Y	Y	R	S	V
Query Conservation
Alig confidence																																													.	.																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.																								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	Q	E	X	N	R	E	V	E	A	A	A	K	R	T	S	P	V	F	L	T	G	E	A	G	S	P	F	E	T	V	A	R	Y	F	H	K	N	G	T	P	W	.	.	V	S	P	A	R	V	E	Y	L	I	D	X	P	X	E	L	L	Q	K	A	E	G	G	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															T		S	S								T	T									T	T			T	T	S			.	.				S	S	T	T													T	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.																								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R	Y	P	K	E	I	N	G	V	E	D	R	L	K	S	R	F	G	W	G	L	T	V	A	I	E	P	P	E	L
Query Conservation
Alig confidence		.												.	.																																		.											.	.	.
Template Conservation		.												.	.																																		.											.	.	.
Template Sequence		.	V	L	Y	V	G	D	I	A	Q	Y	S	.	.	R	N	I	Q	T	G	I	T	F	I	I	G	K	A	E	R	C	R	V	R	V	I	A	S	C	S	Y	A	A	G	S	D	S	.	C	E	E	K	L	A	G	L	F	S	.	.	.	E	S	V	V	R	I	P	P	L
Template Known Secondary structure		.								T	T			.	.															T	T	T	T											T	T	T			.									S	S	.	.	.	S
Template Predicted Secondary structure		.												.	.																																		.											.	.	.
Template SS confidence
			207	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions