Job Description P03004 Confidence 100.00% Date Thu Jan 5 10:57:49 GMT 2012 Rank 1 Aligned Residues 310 % Identity 40% Template c2hcbC_ PDB info PDB header:replication Chain: C: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of amppcp-bound dnaa from aquifex aeolicus Resolution 3.51 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	V	K	H	T	F	D	N	F	V	E	G	K	S	N	Q	L	A	R	A	A	A	R	Q	V	A	D	N	P	G	G	A	Y	N	P	L	F	L	Y	G	G	T	G	L	G	K	T	H	L	L	H	A	V	G	N	G	I	M	A	R	K	P	N	A	K	V	V	Y	M	H	S	E	R	F	V	Q	D	M	V
Query Conservation
Alig confidence																																																															.	.
Template Conservation																																																															.	.
Template Sequence		L	N	P	K	Y	T	L	E	N	F	I	V	G	E	G	N	R	L	A	Y	E	V	V	K	E	A	L	E	N	L	G	S	L	Y	N	P	I	F	I	Y	G	S	V	G	T	G	K	T	H	L	L	Q	A	A	G	N	E	A	K	K	R	.	.	G	Y	R	V	I	Y	S	S	A	D	D	F	A	Q	A	M	V
Template Known Secondary structure				T	T			S	S	S	S				T	T	T										T	T	T	T	T	T	T	S									S	S	S	S	S															T	.	.	T
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	L	Q	N	N	A	I	E	E	F	K	R	Y	Y	R	S	V	D	A	L	L	I	D	D	I	Q	F	F	A	N	K	E	R	S	Q	E	E	F	F	H	T	F	N	A	L	L	E	G	N	Q	Q	I	I	L	T	S	D	R	Y	P	K	E	I	N	G	V	E	D	R	L	K	S	R	F	G	W	G	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	H	L	K	K	G	T	I	N	E	F	R	N	M	Y	K	S	V	D	L	L	L	L	D	D	V	Q	F	L	S	G	K	E	R	T	Q	I	E	F	F	H	I	F	N	T	L	Y	L	L	E	K	Q	I	I	L	A	S	D	R	H	P	Q	K	L	D	G	V	S	D	R	L	V	S	R	F	E	G	G	I	L
Template Known Secondary structure							T											T		S							G	G	G	G	T	T		S																T	T								S	S		G	G	G		T	T	S											S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	I	E	P	P	E	L	E	T	R	V	A	I	L	M	K	K	A	D	E	N	D	I	R	L	P	G	E	V	A	F	F	I	A	K	R	L	R	S	N	V	R	E	L	E	G	A	L	N	R	V	I	A	N	A	N	F	T	G	R	A	I	T	I	D	F	V	R	E	A	L	R	D	L	L	A	L	Q	E
Query Conservation
Alig confidence					.																																		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.																																		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	I	.	E	L	D	N	K	T	R	F	K	I	I	K	E	K	L	K	E	F	N	L	E	L	R	K	E	V	I	D	Y	L	L	E	N	.	T	K	N	V	R	E	I	E	G	K	I	K	L	I	K	L	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	G	L	E	R	K	E	R	K
Template Known Secondary structure					.				S														T	T															.			S												T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S					T
Template Predicted Secondary structure					.																																		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290															.	.	.	.	.	.	.	.	.	300
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	V	T	I	D	N	I	Q	K	T	V	A	E	Y	Y	K	I	K	V	A	D	L	L	S	K	R	R	S	R	S	V	A	R	P	R	Q	M	A	M	A	L	A	K	E	L	T	N	H	S	L	P	E	I	G	D	A	F	G	G	R	D	H	T	T	V	L	H	A	C	R	K	I	E	Q	L	R	E	E	S
Query Conservation
Alig confidence																																.																												.	.	.
Template Conservation																																.																												.	.	.
Template Sequence		E	R	D	K	L	M	Q	I	V	E	F	V	A	N	Y	Y	A	V	K	V	E	D	I	L	S	D	K	N	K	R	.	T	S	E	A	R	K	I	A	M	Y	L	C	R	K	V	C	S	A	S	L	I	E	I	A	R	A	F	.	.	.	D	H	T	T	V	I	H	A	I	R	S	V	E	E	E	K	K	R	K
Template Known Secondary structure			T	T	T	T						T	G	G	G	S	S								S	S					S	.	S	T	T												T	S								T	T			.	.	.													T	T	S
Template Predicted Secondary structure																																.																												.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.				.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		452	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	I	K	E	D	F	S	N	L	I	R	T	L
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	F	K	H	L	V	G	F	L	E	K	Q	A
Template Known Secondary structure		.	.
Template Predicted Secondary structure		.	.
Template SS confidence
				383	.	.	.	.	.	.	390	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions